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Add more user defined parameters for the marine DA #1235

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merged 4 commits into from
Jan 12, 2023
Merged

Add more user defined parameters for the marine DA #1235

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e1c3a46
bump options
guillaumevernieres Jan 11, 2023
c68b129
Merge branch 'develop' into feature/bump-params
guillaumevernieres Jan 11, 2023
b115412
wrong default obs list
guillaumevernieres Jan 11, 2023
2fa500b
fixed convoluted condition
guillaumevernieres Jan 11, 2023
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13 changes: 10 additions & 3 deletions parm/config/config.ocnanal
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Expand Up @@ -6,20 +6,27 @@
echo "BEGIN: config.ocnanal"

export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/soca/obs/config
export OBS_YAML=${HOMEgfs}/sorc/gdas.cd/parm/soca/obs/obs_list.yaml
export OBS_LIST=${OBS_YAML_DIR}/obs_list.yaml
export OBS_LIST=@SOCA_OBS_LIST@
[[ ! -z "${OBS_LIST}" ]] || export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/soca/obs/obs_list.yaml
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export OBS_YAML=${OBS_LIST}
export FV3JEDI_STAGE_YAML=${HOMEgfs}/sorc/gdas.cd/test/soca/testinput/dumy.yaml
export SOCA_INPUT_FIX_DIR=@SOCA_INPUT_FIX_DIR@
export SOCA_VARS=tocn,socn,ssh
export SABER_BLOCKS_YAML=@SABER_BLOCKS_YAML@
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Question: What happens if SOCA_INPUT_FIX_DIR is not defined in the environment? A similar question for NICAS_RESOL and NCICAS_GRID_SIZE? OBS_LIST above provides a default in case SOCA_OBS_LIST is not defined (zero length).

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@RussTreadon-NOAA , they have to be defined in the setup_expt.py yaml of the g-w here parm/config/yaml/defaults.yaml. We host a default obs list yaml in parm, so pointing to that seems appropriate if nothing else is provided. At least that was my logic!

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OK. I was just wondering why we check to see if OBS_LIST is defined while we don't do so for other variables. Seems the answer is that we have defaults in parm/config/yaml/defults.yaml and so it is not necessary to provide defaults in parm/config/config.ocnanal. I don't know if the g-w team or NCO has preferences where / how we define variable defaults.

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@RussTreadon-NOAA , that OBS_LIST is a temporary solution, we'll have to construct the list differently at run time since it certainly is going to be cycle dependent.

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Got it. No need for me to get hung up on this since it's likely to change in the future.

export SOCA_NINNER=@SOCA_NINNER@
export CASE_ANL=@CASE_ANL@
export DOMAIN_STACK_SIZE=2000000
export JEDI_BIN=${HOMEgfs}/sorc/gdas.cd/build/bin

# TODO: Move the R2D2 configuration to a common space
# R2D2
export R2D2_OBS_DB=shared
export R2D2_OBS_DUMP=@R2D2_OBS_DUMP@
export R2D2_OBS_SRC=@R2D2_OBS_SRC@
export R2D2_OBS_WINDOW=24 # TODO: Check if the R2D2 sampling DB window is still needed
export COMIN_OBS=@COMIN_OBS@

# NICAS
export NICAS_RESOL=@NICAS_RESOL@
export NICAS_GRID_SIZE=@NICAS_GRID_SIZE@

echo "END: config.ocnanal"
4 changes: 4 additions & 0 deletions parm/config/yaml/defaults.yaml
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Expand Up @@ -5,7 +5,11 @@ aeroanl:
ocnanal:
SOCA_INPUT_FIX_DIR: '/scratch2/NCEPDEV/ocean/Guillaume.Vernieres/data/static/72x35x25'
CASE_ANL: 'C48'
SOCA_OBS_LIST: ''
COMIN_OBS: '/scratch2/NCEPDEV/marineda/r2d2'
SABER_BLOCKS_YAML: ''
SOCA_NINNER: 50
R2D2_OBS_SRC: 'gdas_marine'
R2D2_OBS_DUMP: 's2s_v1'
NICAS_RESOL: 1
NICAS_GRID_SIZE: 15000