NOAA-EMC · aerorahul · Apr 24, 2023 · Mar 1, 2023 · Mar 1, 2023 · Mar 2, 2023
diff --git a/env/HERA.env b/env/HERA.env
@@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
     echo "Must specify an input argument to set runtime environment variables!"
     echo "argument can be any one of the following:"
     echo "atmanalrun atmensanalrun"
-    echo "aeroanlrun"
+    echo "aeroanlrun landanlrun"
     echo "anal sfcanl fcst post vrfy metp"
     echo "eobs eupd ecen efcs epos"
     echo "postsnd awips gempak"
@@ -83,6 +83,16 @@ elif [[ "${step}" = "aeroanlrun" ]]; then
     [[ ${NTHREADS_AEROANL} -gt ${nth_max} ]] && export NTHREADS_AEROANL=${nth_max}
     export APRUN_AEROANL="${launcher} -n ${npe_aeroanlrun}"
 
+elif [[ "${step}" = "landanlrun" ]]; then
+
+    export APRUNCFP="${launcher} -n \$ncmd ${mpmd_opt}"
+
+    nth_max=$((npe_node_max / npe_node_landanlrun))
+
+    export NTHREADS_LANDANL=${nth_landanlrun:-${nth_max}}
+    [[ ${NTHREADS_LANDANL} -gt ${nth_max} ]] && export NTHREADS_LANDANL=${nth_max}
+    export APRUN_LANDANL="${launcher} -n ${npe_landanlrun}"
+
 elif [[ "${step}" = "ocnanalbmat" ]]; then
 
     export APRUNCFP="${launcher} -n \$ncmd --multi-prog"

diff --git a/env/ORION.env b/env/ORION.env
@@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
     echo "Must specify an input argument to set runtime environment variables!"
     echo "argument can be any one of the following:"
     echo "atmanalrun atmensanalrun"
-    echo "aeroanlrun"
+    echo "aeroanlrun landanlrun"
     echo "anal sfcanl fcst post vrfy metp"
     echo "eobs eupd ecen efcs epos"
     echo "postsnd awips gempak"
@@ -83,6 +83,16 @@ elif [[ "${step}" = "aeroanlrun" ]]; then
     [[ ${NTHREADS_AEROANL} -gt ${nth_max} ]] && export NTHREADS_AEROANL=${nth_max}
     export APRUN_AEROANL="${launcher} -n ${npe_aeroanlrun}"
 
+elif [[ "${step}" = "landanlrun" ]]; then
+
+    export APRUNCFP="${launcher} -n \$ncmd ${mpmd_opt}"
+
+    nth_max=$((npe_node_max / npe_node_landanlrun))
+
+    export NTHREADS_LANDANL=${nth_landanlrun:-${nth_max}}
+    [[ ${NTHREADS_LANDANL} -gt ${nth_max} ]] && export NTHREADS_LANDANL=${nth_max}
+    export APRUN_LANDANL="${launcher} -n ${npe_landanlrun}"
+
 elif [[ "${step}" = "ocnanalbmat" ]]; then
 
     export APRUNCFP="${launcher} -n \$ncmd ${mpmd_opt}"
@@ -306,7 +316,7 @@ elif [[ "${step}" = "gempak" ]]; then
         npe_gempak=${npe_gempak_gfs}
         npe_node_gempak=${npe_node_gempak_gfs}
     fi
-    
+
     nth_max=$((npe_node_max / npe_node_gempak))
 
     export NTHREADS_GEMPAK=${nth_gempak:-1}

diff --git a/jobs/JGLOBAL_LAND_ANALYSIS_FINALIZE b/jobs/JGLOBAL_LAND_ANALYSIS_FINALIZE
@@ -0,0 +1,61 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+export WIPE_DATA="NO"
+export DATA=${DATA:-${DATAROOT}/${RUN}landanl_${cyc}}
+source "${HOMEgfs}/ush/jjob_header.sh" -e "landanlfinal" -c "base landanl landanlfinal"
+
+##############################################
+# Set variables used in the script
+##############################################
+export CDATE=${CDATE:-${PDY}${cyc}}
+export CDUMP=${CDUMP:-${RUN:-"gfs"}}
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+
+GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours")
+export GDATE
+gPDY=${GDATE:0:8}
+export gcyc=${GDATE:8:2}
+export GDUMP=${GDUMP:-"gdas"}
+
+export OPREFIX="${CDUMP}.t${cyc}z."
+export GPREFIX="${GDUMP}.t${gcyc}z."
+export APREFIX="${CDUMP}.t${cyc}z."
+
+export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos}
+
+mkdir -p "${COMOUT}"
+
+# COMIN_GES and COMIN_GES_ENS are used in script
+export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
+export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/atmos"
+
+###############################################################
+# Run relevant script
+
+EXSCRIPT=${GDASLANDFINALPY:-${HOMEgfs}/scripts/exglobal_land_analysis_finalize.py}
+${EXSCRIPT}
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [[ -e "${pgmout}" ]] ; then
+  cat "${pgmout}"
+fi
+
+##########################################
+# Remove the Temporary working directory
+##########################################
+cd "${DATAROOT}" || exit 1
+[[ ${KEEPDATA} = "NO" ]] && rm -rf "${DATA}"
+
+exit 0
diff --git a/jobs/JGLOBAL_LAND_ANALYSIS_INITIALIZE b/jobs/JGLOBAL_LAND_ANALYSIS_INITIALIZE
@@ -0,0 +1,56 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+export DATA=${DATA:-${DATAROOT}/${RUN}landanl_${cyc}}
+source "${HOMEgfs}/ush/jjob_header.sh" -e "landanlinit" -c "base landanl landanlinit"
+
+##############################################
+# Set variables used in the script
+##############################################
+export CDATE=${CDATE:-${PDY}${cyc}}
+export CDUMP=${CDUMP:-${RUN:-"gfs"}}
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+
+GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours")
+export GDATE
+gPDY=${GDATE:0:8}
+export gcyc=${GDATE:8:2}
+export GDUMP=${GDUMP:-"gdas"}
+
+export OPREFIX="${CDUMP}.t${cyc}z."
+export GPREFIX="${GDUMP}.t${gcyc}z."
+export APREFIX="${CDUMP}.t${cyc}z."
+
+export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos}
+
+mkdir -p "${COMOUT}"
+
+# COMIN_GES and COMIN_GES_ENS are used in script
+export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
+export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/atmos"
+
+# Add UFSDA to PYTHONPATH
+export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush/:${PYTHONPATH}
+
+###############################################################
+# Run relevant script
+EXSCRIPT=${GDASLANDINITPY:-${HOMEgfs}/scripts/exglobal_land_analysis_initialize.py}
+${EXSCRIPT}
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [[ -e "${pgmout}" ]] ; then
+  cat "${pgmout}"
+fi
+
+exit 0
diff --git a/jobs/JGLOBAL_LAND_ANALYSIS_RUN b/jobs/JGLOBAL_LAND_ANALYSIS_RUN
@@ -0,0 +1,55 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+export WIPE_DATA="NO"
+export DATA=${DATA:-${DATAROOT}/${RUN}landanl_${cyc}}
+source "${HOMEgfs}/ush/jjob_header.sh" -e "landanlrun" -c "base landanl landanlrun"
+
+##############################################
+# Set variables used in the script
+##############################################
+export CDATE=${CDATE:-${PDY}${cyc}}
+export CDUMP=${CDUMP:-${RUN:-"gfs"}}
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+
+GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours")
+export GDATE
+gPDY=${GDATE:0:8}
+export gcyc=${GDATE:8:2}
+export GDUMP=${GDUMP:-"gdas"}
+
+export OPREFIX="${CDUMP}.t${cyc}z."
+export GPREFIX="${GDUMP}.t${gcyc}z."
+export APREFIX="${CDUMP}.t${cyc}z."
+
+export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos}
+
+mkdir -p "${COMOUT}"
+
+# COMIN_GES and COMIN_GES_ENS are used in script
+export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
+export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/atmos"
+
+###############################################################
+# Run relevant script
+
+EXSCRIPT=${GDASLANDRUNSH:-${HOMEgfs}/scripts/exglobal_land_analysis_run.sh}
+${EXSCRIPT}
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [[ -e "${pgmout}" ]] ; then
+  cat "${pgmout}"
+fi
+
+exit 0
@@ -0,0 +1,23 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source UFSDA workflow modules
+. "${HOMEgfs}/ush/load_ufsda_modules.sh"
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+export job="landanlfinal"
+export jobid="${job}.$$"
+
+###############################################################
+# setup python path for workflow utilities and tasks
+pygwPATH="${HOMEgfs}/ush/python:${HOMEgfs}/ush/python/pygw/src"
+PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${pygwPATH}"
+export PYTHONPATH
+###############################################################
+# Execute the JJOB
+"${HOMEgfs}/jobs/JGLOBAL_LAND_ANALYSIS_FINALIZE"
+status=$?
+exit "${status}"
@@ -0,0 +1,24 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source UFSDA workflow modules
+. "${HOMEgfs}/ush/load_ufsda_modules.sh"
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+export job="landanlinit"
+export jobid="${job}.$$"
+
+###############################################################
+# setup python path for workflow utilities and tasks
+pygwPATH="${HOMEgfs}/ush/python:${HOMEgfs}/ush/python/pygw/src"
+PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${pygwPATH}"
+export PYTHONPATH
+
+###############################################################
+# Execute the JJOB
+"${HOMEgfs}/jobs/JGLOBAL_LAND_ANALYSIS_INITIALIZE"
+status=$?
+exit "${status}"
@@ -0,0 +1,18 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source UFSDA workflow modules
+. "${HOMEgfs}/ush/load_ufsda_modules.sh"
+status=$?
+[[ ${status} -ne 0 ]] && exit "${status}"
+
+export job="landanlrun"
+export jobid="${job}.$$"
+
+###############################################################
+# Execute the JJOB
+"${HOMEgfs}/jobs/JGLOBAL_LAND_ANALYSIS_RUN"
+status=$?
+exit "${status}"
diff --git a/parm/config/config.base.emc.dyn b/parm/config/config.base.emc.dyn
@@ -132,6 +132,8 @@ export COMINice=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/ice
 export COMOUTice=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/ice
 export COMINaero=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/chem
 export COMOUTaero=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/chem
+export COMINland=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos
+export COMOUTland=${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos
 
 export ERRSCRIPT=${ERRSCRIPT:-'eval [[ $err = 0 ]]'}
 export LOGSCRIPT=${LOGSCRIPT:-""}
@@ -157,6 +159,7 @@ export DO_WAVE="NO"
 export DO_OCN="NO"
 export DO_ICE="NO"
 export DO_AERO="NO"
+export DO_LAND="NO"
 export CCPP_SUITE="@CCPP_SUITE@"
 export WAVE_CDUMP="" # When to include wave suite: gdas, gfs, or both
 export DOBNDPNT_WAVE="NO"
@@ -187,6 +190,10 @@ case "${APP}" in
   ATM)
     export confignamevarfornems="atm"
     ;;
+  ATML)
+    export DO_LAND="YES"
+    export confignamevarfornems="atm_land"
+    ;;
   ATMA)
     export DO_AERO="YES"
     export confignamevarfornems="atm_aero"

diff --git a/parm/config/config.landanl b/parm/config/config.landanl
@@ -0,0 +1,20 @@
+#!/bin/bash -x
-#!/bin/bash -x
+#!/usr/bin/env bash
-#!/bin/bash -x
+#!/usr/bin/env bash
+
+########## config.landanl ##########
+# configuration common to all land analysis tasks
+
+echo "BEGIN: config.landanl"
+
+export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/land/obs/config/
+export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/land/obs/lists/gdas_land_prototype.yaml
+export LANDVARYAML=${HOMEgfs}/sorc/gdas.cd/parm/land/letkfoi/letkfoi.yaml
+##export STATICB_TYPE="identity"
+##export BERROR_YAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/berror/staticb_${STATICB_TYPE}.yaml
+export FV3JEDI_FIX=${HOMEgfs}/fix/gdas
+
+export io_layout_x=@IO_LAYOUT_X@
+export io_layout_y=@IO_LAYOUT_Y@
+
+export JEDIVAREXE=${HOMEgfs}/exec/fv3jedi_letkf.x
+
+echo "END: config.landanl"
diff --git a/parm/config/config.landanlfinal b/parm/config/config.landanlfinal
@@ -0,0 +1,10 @@
+#!/bin/bash -x
-#!/bin/bash -x
+#!/usr/bin/env bash
-#!/bin/bash -x
+#!/usr/bin/env bash
+
+########## config.landanlfinal ##########
+# Post Land Analysis specific
+
+echo "BEGIN: config.landanlfinal"
+
+# Get task specific resources
+. "${EXPDIR}/config.resources" landanlfinal
+echo "END: config.landanlfinal"
diff --git a/parm/config/config.landanlinit b/parm/config/config.landanlinit
@@ -0,0 +1,10 @@
+#!/bin/bash -x
-#!/bin/bash -x
+#!/usr/bin/env bash
-#!/bin/bash -x
+#!/usr/bin/env bash
+
+########## config.landanlinit ##########
+# Pre Land Analysis specific
+
+echo "BEGIN: config.landanlinit"
+
+# Get task specific resources
+. "${EXPDIR}/config.resources" landanlinit
+echo "END: config.landanlinit"
diff --git a/parm/config/config.landanlrun b/parm/config/config.landanlrun
@@ -0,0 +1,11 @@
+#!/bin/bash -x
-#!/bin/bash -x
+#!/usr/bin/env bash
-#!/bin/bash -x
+#!/usr/bin/env bash
+
+########## config.landanlrun ##########
+# Land Analysis specific
+
+echo "BEGIN: config.landanlrun"
+
+# Get task specific resources
+. "${EXPDIR}/config.resources" landanlrun
+
+echo "END: config.landanlrun"