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Retire getic.sh and init.sh jobs from global-workflow #1578

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merged 6 commits into from
May 5, 2023
Merged

Retire getic.sh and init.sh jobs from global-workflow #1578

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e069720
remove all references to getic and init from the workflow
aerorahul May 4, 2023
667c402
include coupled_ic in forecast only mode for all APP
aerorahul May 4, 2023
a681266
replace data dep in forecast-only to task dep on coupled_ic job. add…
aerorahul May 4, 2023
67f2995
copy ICs optionally for ocean, ice and wave components
aerorahul May 4, 2023
615fd50
change perms on config.landanlprep
aerorahul May 4, 2023
41e847b
Remove mention of getic and init jobs from RTD docs (#3)
KateFriedman-NOAA May 5, 2023
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4 changes: 0 additions & 4 deletions env/HERA.env
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Original file line number Diff line number Diff line change
Expand Up @@ -261,10 +261,6 @@ elif [[ "${step}" = "epos" ]]; then
[[ ${NTHREADS_EPOS} -gt ${nth_max} ]] && export NTHREADS_EPOS=${nth_max}
export APRUN_EPOS="${launcher} -n ${npe_epos}"

elif [[ "${step}" = "init" ]]; then

export APRUN="${launcher} -n ${npe_init}"

elif [[ "${step}" = "postsnd" ]]; then

export CFP_MP="YES"
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4 changes: 0 additions & 4 deletions env/JET.env
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Expand Up @@ -231,10 +231,6 @@ elif [[ "${step}" = "epos" ]]; then
[[ ${NTHREADS_EPOS} -gt ${nth_max} ]] && export NTHREADS_EPOS=${nth_max}
export APRUN_EPOS="${launcher} -n ${npe_epos}"

elif [[ "${step}" = "init" ]]; then

export APRUN="${launcher} -n ${npe_init}"

elif [[ "${step}" = "postsnd" ]]; then

export CFP_MP="YES"
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4 changes: 0 additions & 4 deletions env/ORION.env
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Expand Up @@ -260,10 +260,6 @@ elif [[ "${step}" = "epos" ]]; then
[[ ${NTHREADS_EPOS} -gt ${nth_max} ]] && export NTHREADS_EPOS=${nth_max}
export APRUN_EPOS="${launcher} -n ${npe_epos}"

elif [[ "${step}" = "init" ]]; then

export APRUN="${launcher} -n ${npe_init}"

elif [[ "${step}" = "postsnd" ]]; then

export CFP_MP="YES"
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4 changes: 0 additions & 4 deletions env/S4.env
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Expand Up @@ -234,10 +234,6 @@ elif [[ "${step}" = "epos" ]]; then
[[ ${NTHREADS_EPOS} -gt ${nth_max} ]] && export NTHREADS_EPOS=${nth_max}
export APRUN_EPOS="${launcher} -n ${npe_epos}"

elif [[ "${step}" = "init" ]]; then

export APRUN="${launcher} -n ${npe_init}"

elif [[ "${step}" = "postsnd" ]]; then

export CFP_MP="YES"
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4 changes: 0 additions & 4 deletions env/WCOSS2.env
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Expand Up @@ -249,10 +249,6 @@ elif [[ "${step}" = "epos" ]]; then
[[ ${NTHREADS_EPOS} -gt ${nth_max} ]] && export NTHREADS_EPOS=${nth_max}
export APRUN_EPOS="${launcher} -n ${npe_epos} -ppn ${npe_node_epos} --cpu-bind depth --depth ${NTHREADS_EPOS}"

elif [[ "${step}" = "init" ]]; then

export APRUN="${launcher}"

elif [[ "${step}" = "postsnd" ]]; then

export MPICH_MPIIO_HINTS_DISPLAY=1
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95 changes: 48 additions & 47 deletions jobs/rocoto/coupled_ic.sh
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Expand Up @@ -44,25 +44,22 @@ error_message(){
echo "FATAL ERROR: Unable to copy ${1} to ${2} (Error code ${3})"
}

YMD=${PDY} HH=${cyc} generate_com -rx COM_ATMOS_INPUT COM_ICE_RESTART COM_WAVE_RESTART
YMD=${gPDY} HH=${gcyc} generate_com -rx COM_OCEAN_RESTART

###############################################################
# Start staging

# Stage the FV3 initial conditions to ROTDIR (cold start)
ATMdir="${COM_ATMOS_INPUT}"
[[ ! -d "${ATMdir}" ]] && mkdir -p "${ATMdir}"
YMD=${PDY} HH=${cyc} generate_com -r COM_ATMOS_INPUT
[[ ! -d "${COM_ATMOS_INPUT}" ]] && mkdir -p "${COM_ATMOS_INPUT}"
source="${BASE_CPLIC}/${CPL_ATMIC}/${PDY}${cyc}/${CDUMP}/${CASE}/INPUT/gfs_ctrl.nc"
target="${ATMdir}/gfs_ctrl.nc"
target="${COM_ATMOS_INPUT}/gfs_ctrl.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
for ftype in gfs_data sfc_data; do
for tt in $(seq 1 6); do
source="${BASE_CPLIC}/${CPL_ATMIC}/${PDY}${cyc}/${CDUMP}/${CASE}/INPUT/${ftype}.tile${tt}.nc"
target="${ATMdir}/${ftype}.tile${tt}.nc"
target="${COM_ATMOS_INPUT}/${ftype}.tile${tt}.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
Expand All @@ -71,52 +68,56 @@ for ftype in gfs_data sfc_data; do
done

# Stage ocean initial conditions to ROTDIR (warm start)
OCNdir="${COM_OCEAN_RESTART}"
[[ ! -d "${OCNdir}" ]] && mkdir -p "${OCNdir}"
source="${BASE_CPLIC}/${CPL_OCNIC}/${PDY}${cyc}/ocn/${OCNRES}/MOM.res.nc"
target="${OCNdir}/${PDY}.${cyc}0000.MOM.res.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
case $OCNRES in
"025")
for nn in $(seq 1 4); do
source="${BASE_CPLIC}/${CPL_OCNIC}/${PDY}${cyc}/ocn/${OCNRES}/MOM.res_${nn}.nc"
if [[ -f "${source}" ]]; then
target="${OCNdir}/${PDY}.${cyc}0000.MOM.res_${nn}.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
fi
done
;;
*)
echo "FATAL ERROR: Unsupported ocean resolution ${OCNRES}"
rc=1
err=$((err + rc))
;;
esac
if [[ "${DO_OCN:-}" = "YES" ]]; then
YMD=${gPDY} HH=${gcyc} generate_com -r COM_OCEAN_RESTART
[[ ! -d "${COM_OCEAN_RESTART}" ]] && mkdir -p "${COM_OCEAN_RESTART}"
source="${BASE_CPLIC}/${CPL_OCNIC}/${PDY}${cyc}/ocn/${OCNRES}/MOM.res.nc"
target="${COM_OCEAN_RESTART}/${PDY}.${cyc}0000.MOM.res.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
case "${OCNRES}" in
"025")
for nn in $(seq 1 4); do
source="${BASE_CPLIC}/${CPL_OCNIC}/${PDY}${cyc}/ocn/${OCNRES}/MOM.res_${nn}.nc"
if [[ -f "${source}" ]]; then
target="${COM_OCEAN_RESTART}/${PDY}.${cyc}0000.MOM.res_${nn}.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
fi
done
;;
*)
echo "FATAL ERROR: Unsupported ocean resolution ${OCNRES}"
rc=1
err=$((err + rc))
;;
esac
fi

# Stage ice initial conditions to ROTDIR (cold start as these are SIS2 generated)
ICEdir="${COM_ICE_RESTART}"
[[ ! -d "${ICEdir}" ]] && mkdir -p "${ICEdir}"
ICERESdec=$(echo "${ICERES}" | awk '{printf "%0.2f", $1/100}')
source="${BASE_CPLIC}/${CPL_ICEIC}/${PDY}${cyc}/ice/${ICERES}/cice5_model_${ICERESdec}.res_${PDY}${cyc}.nc"
target="${ICEdir}/${PDY}.${cyc}0000.cice_model.res.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
if [[ "${DO_ICE:-}" = "YES" ]]; then
YMD=${PDY} HH=${cyc} generate_com -r COM_ICE_RESTART
[[ ! -d "${COM_ICE_RESTART}" ]] && mkdir -p "${COM_ICE_RESTART}"
ICERESdec=$(echo "${ICERES}" | awk '{printf "%0.2f", $1/100}')
source="${BASE_CPLIC}/${CPL_ICEIC}/${PDY}${cyc}/ice/${ICERES}/cice5_model_${ICERESdec}.res_${PDY}${cyc}.nc"
target="${COM_ICE_RESTART}/${PDY}.${cyc}0000.cice_model.res.nc"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
err=$((err + rc))
fi

# Stage the WW3 initial conditions to ROTDIR (warm start; TODO: these should be placed in $RUN.$gPDY/$gcyc)
if [[ "${DO_WAVE}" = "YES" ]]; then
WAVdir="${COM_WAVE_RESTART}"
[[ ! -d "${WAVdir}" ]] && mkdir -p "${WAVdir}"
if [[ "${DO_WAVE:-}" = "YES" ]]; then
YMD=${PDY} HH=${cyc} generate_com -r COM_WAVE_RESTART
[[ ! -d "${COM_WAVE_RESTART}" ]] && mkdir -p "${COM_WAVE_RESTART}"
for grdID in ${waveGRD}; do # TODO: check if this is a bash array; if so adjust
source="${BASE_CPLIC}/${CPL_WAVIC}/${PDY}${cyc}/wav/${grdID}/${PDY}.${cyc}0000.restart.${grdID}"
target="${WAVdir}/${PDY}.${cyc}0000.restart.${grdID}"
target="${COM_WAVE_RESTART}/${PDY}.${cyc}0000.restart.${grdID}"
${NCP} "${source}" "${target}"
rc=$?
[[ ${rc} -ne 0 ]] && error_message "${source}" "${target}" "${rc}"
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169 changes: 0 additions & 169 deletions jobs/rocoto/getic.sh
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