Feature/gfsv16intocoupled

.gitignore

@@ -1,41 +1,56 @@
+# Ignore all compiled files
+#--------------------------
 __pycache__
+*.pyc
+*.o
+*.mod
+
+# Ignore exec folder
+#-------------------
 exec/
-fix
+
+# Ignore fix directory symlinks
+#------------------------------
 fix/0readme
-fix/fix_am
-fix/fix_chem
-fix/fix_fv3
-fix/fix_fv3_gmted2010
-fix/fix_gldas
-fix/fix_gsi
-fix/fix_gsi_MISSING
-fix/fix_orog
-fix/fix_sfc_climo
-fix/fix_verif
-fix/fix_wave_gfs
+fix/fix_*
 fix/gdas/
 fix/wafs
+
+# Ignore scripts from external symlink jobs
+#------------------------------
+jobs/JGDAS_ATMOS_ANALYSIS_DIAG
+jobs/JGDAS_ATMOS_CHGRES_FORENKF
+jobs/JGDAS_ATMOS_GLDAS
+jobs/JGDAS_ATMOS_VERFOZN
+jobs/JGDAS_ATMOS_VERFRAD
+jobs/JGDAS_ATMOS_VMINMON
+jobs/JGDAS_ENKF_DIAG
+jobs/JGDAS_ENKF_ECEN
 jobs/JGDAS_ENKF_FCST
 jobs/JGDAS_ENKF_POST
-jobs/JGDAS_ENKF_RECENTER
-jobs/JGDAS_VERFOZN
-jobs/JGDAS_VERFRAD
-jobs/JGDAS_VMINMON
-jobs/JGFS_VMINMON
-jobs/JGFS_WAFS
-jobs/JGFS_WAFS_BLENDING
-jobs/JGFS_WAFS_GCIP
-jobs/JGFS_WAFS_GRIB2
-jobs/JGLOBAL_ANALYSIS
-jobs/JGLOBAL_ENKF_INNOVATE_OBS
-jobs/JGLOBAL_ENKF_SELECT_OBS
-jobs/JGLOBAL_ENKF_UPDATE
-jobs/JGLOBAL_NCEPPOST
-jobs/JGLOBAL_POST_MANAGER
+jobs/JGDAS_ENKF_SELECT_OBS
+jobs/JGDAS_ENKF_SFC
+jobs/JGDAS_ENKF_UPDATE
+jobs/JGFS_ATMOS_VMINMON
+jobs/JGFS_ATMOS_WAFS
+jobs/JGFS_ATMOS_WAFS_BLENDING
+jobs/JGFS_ATMOS_WAFS_BLENDING_0P25
+jobs/JGFS_ATMOS_WAFS_GCIP
+jobs/JGFS_ATMOS_WAFS_GRIB2
+jobs/JGFS_ATMOS_WAFS_GRIB2_0P25
+jobs/JGLOBAL_ATMOS_ANALYSIS
+jobs/JGLOBAL_ATMOS_ANALYSIS_CALC
+jobs/JGLOBAL_ATMOS_NCEPPOST
+jobs/JGLOBAL_ATMOS_POST_MANAGER
+
+# Ignore parm file symlinks
+#--------------------------
 parm/config/config.base
-parm/mon/
+parm/gldas
+parm/mon
 parm/post
 parm/wafs
+
 scripts/exemcsfc_global_sfc_prep.sh.ecf
 scripts/exgdas_nceppost.sh.ecf
 scripts/exgdas_vrfminmon.sh.ecf
@@ -55,6 +70,45 @@ scripts/exglobal_enkf_recenter_fv3gfs.sh.ecf
 scripts/exglobal_enkf_update_fv3gfs.sh.ecf
 scripts/exglobal_innovate_obs_fv3gfs.sh.ecf
 scripts/exglobal_pmgr.sh.ecf
+scripts/exemcsfc_global_sfc_prep.sh
+scripts/exgdas_atmos_chgres_forenkf.sh
+scripts/exgdas_atmos_gldas.sh
+scripts/exgdas_atmos_nceppost.sh
+scripts/exgdas_atmos_verfozn.sh
+scripts/exgdas_atmos_verfrad.sh
+scripts/exgdas_atmos_vminmon.sh
+scripts/exgdas_enkf_ecen.sh
+scripts/exgdas_enkf_fcst.sh
+scripts/exgdas_enkf_post.sh
+scripts/exgdas_enkf_select_obs.sh
+scripts/exgdas_enkf_sfc.sh
+scripts/exgdas_enkf_update.sh
+scripts/exgfs_atmos_nceppost.sh
+scripts/exgfs_atmos_vminmon.sh
+scripts/exgfs_atmos_wafs_blending.sh
+scripts/exgfs_atmos_wafs_blending_0p25.sh
+scripts/exgfs_atmos_wafs_gcip.sh
+scripts/exgfs_atmos_wafs_grib.sh
+scripts/exgfs_atmos_wafs_grib2.sh
+scripts/exgfs_atmos_wafs_grib2_0p25.sh
+scripts/exglobal_atmos_analysis.sh
+scripts/exglobal_atmos_analysis_calc.sh
+scripts/exglobal_atmos_pmgr.sh
+scripts/exglobal_diag.sh
+
+sorc/*log
+
+sorc/calc_analysis.fd
+sorc/calc_increment_ens_ncio.fd
+sorc/gdas2gldas.fd
+sorc/gldas2gdas.fd
+sorc/gldas_forcing.fd
+sorc/gldas_model.fd
+sorc/gldas_post.fd
+sorc/gldas_rst.fd
+sorc/interp_inc.fd
+sorc/ncdiag_cat.fd
+sorc/nemsio_chgdate.fd
 sorc/calc_increment_ens.fd
 sorc/checkout-fv3gfs.log
 sorc/checkout-ufs_coupled.log
@@ -96,6 +150,7 @@ sorc/gfs_bufr.fd/vintg.o
 sorc/gfs_ncep_post.fd
 sorc/gfs_post.fd/
 sorc/gfs_wafs.fd/
+sorc/gldas.fd/
 sorc/global_chgres.fd
 sorc/global_cycle.fd
 sorc/global_enkf.fd
@@ -130,6 +185,10 @@ sorc/wafs_setmissing.fd
 sorc/checkout-fv3_coupled.log
 sorc/checkout-gsi.fd.log
 sorc/fv3_coupled.fd/
+
+
+ush/calcanl_gfs.py
+ush/calcinc_gfs.py
 ush/emcsfc_ice_blend.sh
 ush/emcsfc_snow.sh
 ush/fix_precip.sh
@@ -140,17 +199,26 @@ ush/fv3gfs_dwn_nems.sh
 ush/fv3gfs_filter_topo.sh
 ush/fv3gfs_make_grid.sh
 ush/fv3gfs_make_orog.sh
+ush/getncdimlen
 ush/gfs_nceppost.sh
 ush/gfs_transfer.sh
+ush/gldas_archive.sh
+ush/gldas_forcing.sh
+ush/gldas_get_data.sh
+ush/gldas_liscrd.sh
+ush/gldas_post.sh
+ush/gldas_process_data.sh
 ush/global_chgres.sh
 ush/global_chgres_driver.sh
 ush/global_cycle.sh
 ush/global_cycle_driver.sh
+ush/gsi_utils.py
 ush/link_crtm_fix.sh
 ush/minmon_xtrct_costs.pl
 ush/minmon_xtrct_gnorms.pl
 ush/minmon_xtrct_reduct.pl
 ush/mkwfsgbl.sh
+ush/mod_icec.sh
 ush/ozn_xtrct.sh
 ush/radmon_ck_stdout.sh
 ush/radmon_err_rpt.sh
@@ -160,12 +228,44 @@ ush/radmon_verf_bcor.sh
 ush/radmon_verf_time.sh
 ush/trim_rh.sh
 ush/wafs_blending.sh
+ush/wafs_grib2.regrid.sh
 ush/wafs_intdsk.sh
+ush/emcsfc_ice_blend.sh
+ush/emcsfc_snow.sh
+ush/fix_precip.sh
+ush/fv3gfs_chgres.sh
+ush/fv3gfs_downstream_nems.sh
+ush/fv3gfs_driver_grid.sh
+ush/fv3gfs_dwn_nems.sh
+ush/fv3gfs_filter_topo.sh
+ush/fv3gfs_make_grid.sh
+ush/fv3gfs_make_orog.sh
+ush/gfs_nceppost.sh
+ush/gfs_transfer.sh
+ush/global_chgres.sh
+ush/global_chgres_driver.sh
+ush/global_cycle.sh
+ush/global_cycle_driver.sh
+ush/link_crtm_fix.sh
+ush/minmon_xtrct_costs.pl
+ush/minmon_xtrct_gnorms.pl
+ush/minmon_xtrct_reduct.pl
+ush/mkwfsgbl.sh
+ush/ozn_xtrct.sh
+ush/radmon_ck_stdout.sh
+ush/radmon_err_rpt.sh
+ush/radmon_verf_angle.sh
+ush/radmon_verf_bcoef.sh
+ush/radmon_verf_bcor.sh
+ush/radmon_verf_time.sh
+ush/trim_rh.sh
+ush/wafs_blending.sh
+ush/wafs_intdsk.sh
+
+# util symlinks
 util/sub_slurm
 util/sub_wcoss_c
 util/sub_wcoss_d
+
 workflow/user.yaml
-sorc/checkout-gldas.fd.log
-sorc/gldas.fd/
-sorc/reg2grb2.fd/*.o
-sorc/reg2grb2.fd/*.mod
+

Externals.cfg

@@ -1,42 +1,49 @@
 # External sub-modules of global-workflow
 
-[NEMSfv3gfs]
-tag = gfs.v16_PhysicsUpdate
+[FV3GFS]
+tag = GFS.v16.0.14
 local_path = sorc/fv3gfs.fd
-repo_url = ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs
+repo_url = https://github.com/ufs-community/ufs-weather-model.git
 protocol = git
 required = True
 
 [GSI]
-hash = cb8f69d8
+tag = gfsda.v16.0.0
 local_path = sorc/gsi.fd
-repo_url = ssh://vlab.ncep.noaa.gov:29418/ProdGSI
+repo_url = https://github.com/NOAA-EMC/GSI.git
+protocol = git
+required = True
+
+[GLDAS]
+tag = gldas_gfsv16_release.v1.11.0
+local_path = sorc/gldas.fd
+repo_url = https://github.com/NOAA-EMC/GLDAS.git
 protocol = git
 required = True
 
 [EMC_post]
-hash = ba7e59b2
+tag = upp_gfsv16_release.v1.1.0
 local_path = sorc/gfs_post.fd
 repo_url = https://github.com/NOAA-EMC/EMC_post.git
 protocol = git
 required = True
 
 [UFS_UTILS]
-tag = v1.1.0
+tag = ops-gfsv16.0.0
 local_path = sorc/ufs_utils.fd
 repo_url = https://github.com/NOAA-EMC/UFS_UTILS.git
 protocol = git
 required = True
 
 [EMC_verif-global]
-tag = verif_global_v1.5.0
+tag = verif_global_v1.11.0
 local_path = sorc/verif-global.fd
 repo_url = https://github.com/NOAA-EMC/EMC_verif-global.git
 protocol = git
 required = True
 
 [EMC_gfs_wafs]
-tag = gfs_wafs.v5.0.11
+tag = gfs_wafs.v6.0.14
 local_path = sorc/gfs_wafs.fd
 repo_url = https://github.com/NOAA-EMC/EMC_gfs_wafs.git
 protocol = git

README.md

@@ -10,14 +10,11 @@ cd coupled-workflow
 git checkout feature/coupled-crow
 git submodule update --init --recursive     #Update submodules 
 cd sorc
-sh checkout.sh coupled                      # Check out the coupled code, EMC_post, gsi, ...
+sh checkout.sh -c                    # Check out forecast model with CCPP=YES/COUPLED=YES
 ```
 ## Compile code used in ufs-s2s-model and EMC_post and link fixed files and executable programs:
 ```
-sh build_ncep_post.sh        #This command will build ncep_post
-sh build_ww3prepost.sh       #This command will build ww3 prep and post exes
-sh build_ufs_coupled.sh      #This command will build the UFS coupled model exe
-sh build_reg2grb2.sh         #This command will build exes for ocean-ice post
+sh build_all.sh -c           #This command will build only execs for coupled
 
 To link fixed files and executable programs for the coupled application:
 On Hera: