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Merra2 #254

Merged
merged 18 commits into from
May 19, 2021
Merged

Merra2 #254

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3bdc629
merra2 workflow for orion
AnningCheng-NOAA Dec 1, 2020
947bbad
added merra2 input and update diag_table
AnningCheng-NOAA Dec 1, 2020
79f23fa
fixed a bug related to orion
AnningCheng-NOAA Dec 1, 2020
81442ad
high resolution MERRA2 data used
AnningCheng-NOAA Dec 1, 2020
378953d
udate config.base.emc.dyn
AnningCheng-NOAA Dec 2, 2020
29bd69b
update merra2 before a new pull request
AnningCheng-NOAA Feb 2, 2021
1ea07da
testing merra2 workflow in hera
AnningCheng-NOAA Feb 9, 2021
960ca42
updated config.fcst
AnningCheng-NOAA Mar 1, 2021
0f97ccd
Merge branch 'merra2' of https://github.com/AnningCheng-NOAA/global-w…
AnningCheng-NOAA Mar 1, 2021
ac76613
Merge remote-tracking branch 'upstream/develop' into merra2
AnningCheng-NOAA Mar 8, 2021
be564bb
changes on build_fv3.sh and symlinks to optical data files instead of cp
AnningCheng-NOAA Apr 22, 2021
101905c
changed fix dir for link_fv3gfs
AnningCheng-NOAA Apr 27, 2021
587ac0c
changes added in link_fv3gfs for fix_aer
AnningCheng-NOAA Apr 28, 2021
bf5d110
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
AnningCheng-NOAA May 3, 2021
dfc8aa9
Merge remote-tracking branch 'upstream/develop' into merra2
AnningCheng-NOAA May 12, 2021
6b57416
build_fv3.sh with ATM
AnningCheng-NOAA May 14, 2021
283c4a0
fixed a compilation error, NEMs/exe existing, in hera
AnningCheng-NOAA May 17, 2021
fa5d1e2
change fv3gfs checkout head
AnningCheng-NOAA May 18, 2021
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6 changes: 3 additions & 3 deletions parm/config/config.base.emc.dyn
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Expand Up @@ -140,8 +140,8 @@ export CASE="@CASECTL@"
export CASE_ENKF="@CASEENS@"

# Run with CCPP physics
export RUN_CCPP="NO"
export CCPP_SUITE="FV3_GFS_v16beta"
export RUN_CCPP="YES"
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export CCPP_SUITE="FV3_GFS_v16"

# Surface cycle update frequency
if [[ "$CDUMP" == "gdas" ]] ; then
Expand Down Expand Up @@ -222,7 +222,7 @@ export DO_GLDAS="YES"
export gldas_cyc=00

# run wave component
export DO_WAVE="YES"
export DO_WAVE="NO"
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export WAVE_CDUMP="both"

# Microphysics Options: 99-ZhaoCarr, 8-Thompson; 6-WSM6, 10-MG, 11-GFDL
Expand Down
7 changes: 4 additions & 3 deletions parm/config/config.fcst
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Expand Up @@ -89,7 +89,7 @@ else
fi

# Radiation options
export IAER=5111 ;#spectral band mapping method for aerosol optical properties
export IAER=1011 ;#spectral band mapping method for aerosol optical properties
export iovr_lw=3 ;#de-correlation length cloud overlap method (Barker, 2008)
export iovr_sw=3 ;#de-correlation length cloud overlap method (Barker, 2008)
export iovr=3 ;#de-correlation length cloud overlap method (Barker, 2008)
Expand Down Expand Up @@ -186,7 +186,8 @@ if [[ "$CDUMP" == "gdas" ]] ; then # GDAS cycle specific parameters

# Variables used in DA cycling
if [ $QUILTING = ".true." -a $OUTPUT_GRID = "gaussian_grid" ]; then
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da"
##export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da"
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_aod"
else
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_da_orig"
fi
Expand Down Expand Up @@ -217,7 +218,7 @@ elif [[ "$CDUMP" == "gfs" ]] ; then # GFS cycle specific parameters

# Write more variables to output
if [ $QUILTING = ".true." -a $OUTPUT_GRID = "gaussian_grid" ]; then
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table"
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_aod"
else
export DIAG_TABLE="$HOMEgfs/parm/parm_fv3diag/diag_table_orig"
fi
Expand Down
213 changes: 213 additions & 0 deletions parm/parm_fv3diag/diag_table_aod
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Original file line number Diff line number Diff line change
@@ -0,0 +1,213 @@
"fv3_history", 0, "hours", 1, "hours", "time"
"fv3_history2d", 0, "hours", 1, "hours", "time"

"gfs_dyn", "ucomp", "ugrd", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "vcomp", "vgrd", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "sphum", "spfh", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "temp", "tmp", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "liq_wat", "clwmr", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "ice_wat", "icmr", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "snowwat", "snmr", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "rainwat", "rwmr", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "graupel", "grle", "fv3_history", "all", .false., "none", 2
#"gfs_dyn", "ice_nc", "nccice", "fv3_history", "all", .false., "none", 2
#"gfs_dyn", "rain_nc", "nconrd", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "o3mr", "o3mr", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "cld_amt", "cld_amt", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "delp", "dpres", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "delz", "delz", "fv3_history", "all", .false., "none", 2
#"gfs_dyn", "pfhy", "preshy", "fv3_history", "all", .false., "none", 2
#"gfs_dyn", "pfnh", "presnh", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "w", "dzdt", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "ps", "pressfc", "fv3_history", "all", .false., "none", 2
"gfs_dyn", "hs", "hgtsfc", "fv3_history", "all", .false., "none", 2

"gfs_phys", "ALBDO_ave", "albdo_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "cnvprcp_ave", "cprat_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "cnvprcpb_ave", "cpratb_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "totprcp_ave", "prate_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "totprcpb_ave", "prateb_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DLWRF", "dlwrf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DLWRFI", "dlwrf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "ULWRF", "ulwrf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "ULWRFI", "ulwrf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DSWRF", "dswrf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DSWRFI", "dswrf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "USWRF", "uswrf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "USWRFI", "uswrf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DSWRFtoa", "dswrf_avetoa", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "USWRFtoa", "uswrf_avetoa", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "ULWRFtoa", "ulwrf_avetoa", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "gflux_ave", "gflux_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "hpbl", "hpbl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "lhtfl_ave", "lhtfl_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "shtfl_ave", "shtfl_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "pwat", "pwatclm", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "soilm", "soilm", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDC_aveclm", "tcdc_aveclm", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDC_avebndcl", "tcdc_avebndcl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDC_avelcl", "tcdc_avelcl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDC_avemcl", "tcdc_avemcl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDC_avehcl", "tcdc_avehcl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TCDCcnvcl", "tcdccnvcl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avelct", "pres_avelct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avelcb", "pres_avelcb", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avemct", "pres_avemct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avemcb", "pres_avemcb", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avehct", "pres_avehct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PRES_avehcb", "pres_avehcb", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PREScnvclt", "prescnvclt", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "PREScnvclb", "prescnvclb", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TEMP_avehct", "tmp_avehct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TEMP_avemct", "tmp_avemct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "TEMP_avelct", "tmp_avelct", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "u-gwd_ave", "u-gwd_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "v-gwd_ave", "v-gwd_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "dusfc", "uflx_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "dvsfc", "vflx_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "acond", "acond", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "cduvb_ave", "cduvb_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "cpofp", "cpofp", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "duvb_ave", "duvb_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csdlf_ave", "csdlf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csusf_ave", "csusf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csusf_avetoa", "csusftoa", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csdsf_ave", "csdsf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csulf_ave", "csulf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "csulf_avetoa", "csulftoa", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "cwork_ave", "cwork_aveclm", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "evbs_ave", "evbs_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "evcw_ave", "evcw_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "fldcp", "fldcp", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "hgt_hyblev1", "hgt_hyblev1", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "spfh_hyblev1", "spfh_hyblev1", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "ugrd_hyblev1", "ugrd_hyblev1", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "vgrd_hyblev1", "vgrd_hyblev1", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "tmp_hyblev1", "tmp_hyblev1", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "gfluxi", "gflux", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "lhtfl", "lhtfl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "shtfl", "shtfl", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "pevpr", "pevpr", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "pevpr_ave", "pevpr_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "sbsno_ave", "sbsno_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "sfexc", "sfexc", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "snohf", "snohf", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "snowc_ave", "snowc_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "spfhmax2m", "spfhmax_max2m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "spfhmin2m", "spfhmin_min2m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "tmpmax2m", "tmax_max2m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "tmpmin2m", "tmin_min2m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "ssrun_acc", "ssrun_acc", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "sunsd_acc", "sunsd_acc", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "watr_acc", "watr_acc", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "wilt", "wilt", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "vbdsf_ave", "vbdsf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "vddsf_ave", "vddsf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "nbdsf_ave", "nbdsf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "nddsf_ave", "nddsf_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "trans_ave", "trans_ave", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "psurf", "pressfc", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "u10m", "ugrd10m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "v10m", "vgrd10m", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "AOD_550", "aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "DU_AOD_550", "du_aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "SU_AOD_550", "su_aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "BC_AOD_550", "bc_aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "OC_AOD_550", "oc_aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "SS_AOD_550", "ss_aod550", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "crain", "crain", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "tprcp", "tprcp", "fv3_history2d", "all", .false., "none", 2
"gfs_phys", "rainc", "cnvprcp", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "hgtsfc", "orog", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "weasd", "weasd", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "f10m", "f10m", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "q2m", "spfh2m", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "t2m", "tmp2m", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "tsfc", "tmpsfc", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "vtype", "vtype", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "stype", "sotyp", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slmsksfc", "land", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "vfracsfc", "veg", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "zorlsfc", "sfcr", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "uustar", "fricv", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilt1", "soilt1" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilt2", "soilt2" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilt3", "soilt3" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilt4", "soilt4" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilw1", "soilw1" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilw2", "soilw2" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilw3", "soilw3" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "soilw4", "soilw4" "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slc_1", "soill1", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slc_2", "soill2", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slc_3", "soill3", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slc_4", "soill4", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "slope", "sltyp", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "alnsf", "alnsf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "alnwf", "alnwf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "alvsf", "alvsf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "alvwf", "alvwf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "canopy", "cnwat", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "facsf", "facsf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "facwf", "facwf", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "ffhh", "ffhh", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "ffmm", "ffmm", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "fice", "icec", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "hice", "icetk", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "snoalb", "snoalb", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "shdmax", "shdmax", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "shdmin", "shdmin", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "snowd", "snod", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "tg3", "tg3", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "tisfc", "tisfc", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "tref", "tref", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "z_c", "zc", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "c_0", "c0", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "c_d", "cd", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "w_0", "w0", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "w_d", "wd", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xt", "xt", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xz", "xz", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "dt_cool", "dtcool", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xs", "xs", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xu", "xu", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xv", "xv", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xtts", "xtts", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "xzts", "xzts", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "d_conv", "dconv", "fv3_history2d", "all", .false., "none", 2
"gfs_sfc", "qrain", "qrain", "fv3_history2d", "all", .false., "none", 2


#=============================================================================================
#
#====> This file can be used with diag_manager/v2.0a (or higher) <====
#
#
# FORMATS FOR FILE ENTRIES (not all input values are used)
# ------------------------
#
#"file_name", output_freq, "output_units", format, "time_units", "long_name",
#
#
#output_freq: > 0 output frequency in "output_units"
# = 0 output frequency every time step
# =-1 output frequency at end of run
#
#output_units = units used for output frequency
# (years, months, days, minutes, hours, seconds)
#
#time_units = units used to label the time axis
# (days, minutes, hours, seconds)
#
#
# FORMAT FOR FIELD ENTRIES (not all input values are used)
# ------------------------
#
#"module_name", "field_name", "output_name", "file_name" "time_sampling", time_avg, "other_opts", packing
#
#time_avg = .true. or .false.
#
#packing = 1 double precision
# = 2 float
# = 4 packed 16-bit integers
# = 8 packed 1-byte (not tested?)
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