Update MOM6_refineDiag.csh #65
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Since "ssu" and "ssv" diagnostics are no longer available in ocean_daily.nc the ��EddyKineticEnergy.py analysis script does not work anymore and there is no point to call it here.
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I believe b0c5796 fixes the EKE plots so I'm closing this PR. @nikizadehgfdl comment if you disagree... |
adcroft
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Jul 6, 2018
- Renaming of MOM_KPP changed MOM_parameter_doc files (NOAA-GFDL/MOM6@a7d5b5f) - New diagnostics added for separate entrainment rates for salinity/temperature - Updated SCM_idealized_hurricane to retain answers after default for INTERP_TYPE changed. - NOAA-GFDL/MOM6@f20ad2c Merge branch 'gustavo-marques-update_KPP' into dev/master - NOAA-GFDL/MOM6@a5c14ae Merge branch 'dev/master' into update_KPP - NOAA-GFDL/MOM6@41883ee Sets lnoDGat1=.true. when gradient should not be matched - NOAA-GFDL/MOM6@18b1598 Merge pull request #71 from gustavo-marques/fix_kpp - NOAA-GFDL/MOM6@62c6f47 Merge branch 'dev/ncar' into fix_kpp - NOAA-GFDL/MOM6@53e7a87 Fix bugs - NOAA-GFDL/MOM6@501f85b Improve KPP - NOAA-GFDL/MOM6@dbe277d Update comments - NOAA-GFDL/MOM6@a3f37c4 Update Doxygen - NOAA-GFDL/MOM6@fb49644 Clean comments - NOAA-GFDL/MOM6@cfb1edd Update diabatic - NOAA-GFDL/MOM6@e717072 Add FATAL error if USE_KPP=True and ADD_KV_SLOW=True - NOAA-GFDL/MOM6@4f44314 Update MOM_CVMix_shear - NOAA-GFDL/MOM6@dd6a625 Merge pull request #68 from alperaltuntas/kpp_changes - NOAA-GFDL/MOM6@b1f9bb0 remove duplicate CS%N allocation - NOAA-GFDL/MOM6@d0f4672 rename MOM_KPP.F90 as MOM_CVMix_KPP.F90 - NOAA-GFDL/MOM6@d34678e fix bld limiter after smoothing - NOAA-GFDL/MOM6@f1d6773 adjust diabatic driver for the new KPP_calculate - NOAA-GFDL/MOM6@a7d5b5f Rename MOM_KPP.F90 -> MOM_CVMix_KPP.F90 - NOAA-GFDL/MOM6@6e7159a Merge pull request #67 from gustavo-marques/restructure_diabatic_driver - NOAA-GFDL/MOM6@b3652f8 Merge branch 'dev/ncar' into restructure_diabatic_driver - NOAA-GFDL/MOM6@f11f6c2 Merge pull request #66 from gustavo-marques/merge-dev-master-candidate-2018-06-03 - NOAA-GFDL/MOM6@df2f537 Merge branch 'dev/ncar' into dev-master-candidate-2018-06-03 - NOAA-GFDL/MOM6@b01dda0 Clean unecessary layer-related code - NOAA-GFDL/MOM6@c9c4545 Merge branch 'restructure_diabatic_driver' of https://github.com/gustavo-marques/MOM6 into restructure_diabatic_driver - NOAA-GFDL/MOM6@139f6af Add comments - NOAA-GFDL/MOM6@1c15d0f Merge branch 'dev/ncar' into restructure_diabatic_driver - NOAA-GFDL/MOM6@db2f2d8 Merge pull request #65 from alperaltuntas/introduce_cvmix_tidal - NOAA-GFDL/MOM6@754f4af Merge pull request #2 from NCAR/dev/ncar - NOAA-GFDL/MOM6@21d1038 Check if Kv is associated before updating it - NOAA-GFDL/MOM6@b2fac04 add multi-smoothing and deepening-only smoothing options - NOAA-GFDL/MOM6@5477d8c Merge pull request #64 from NCAR/fix_mct_cap - NOAA-GFDL/MOM6@e12d952 fix a typo in ocn_comp_mct.F90 - NOAA-GFDL/MOM6@4c36f8f Computes diffusivity for salt and heat separetely - NOAA-GFDL/MOM6@fcdd55d Add missing code relate to old double-diffusion method - NOAA-GFDL/MOM6@e15fe54 Add missing code relate to old double-diffusion method - NOAA-GFDL/MOM6@88886d9 Doxygenize tracer_vertdiff - NOAA-GFDL/MOM6@8e19b4a Merge branch 'dev/ncar' into restructure_diabatic_driver - NOAA-GFDL/MOM6@c266f9f First step towards using Kd_heat and Kd_salt - NOAA-GFDL/MOM6@62ffc0b Merge pull request #63 from gustavo-marques/add_old_double_diffusion - NOAA-GFDL/MOM6@8c83e21 add viscosities due to tidal mixing - NOAA-GFDL/MOM6@cfc6742 prevent OBL depths deeper than the bathymetric depth - NOAA-GFDL/MOM6@4dd0111 add original OBLdepth diag
marshallward
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that referenced
this pull request
Apr 14, 2021
- NOAA-GFDL/MOM6@fc75e0fa4 Merge pull request #1370 from Hallberg-NOAA/F_case_file_output - NOAA-GFDL/MOM6@e8e8abab9 Merge remote-tracking branch 'hallberg/F_case_file_output' into F_case_file_output - NOAA-GFDL/MOM6@96f1d1e89 Use allocatable types in write_ocean_geometry_files - NOAA-GFDL/MOM6@983824a69 Merge branch 'dev/gfdl' into F_case_file_output - NOAA-GFDL/MOM6@5fe51b18e Merge pull request #1369 from Hallberg-NOAA/SIS2_IO_upgrades - NOAA-GFDL/MOM6@0eb47b25a +More consistent treatment of input_filename = 'F' - NOAA-GFDL/MOM6@03b997b88 +Enhanced support for novel axes in MOM_io - NOAA-GFDL/MOM6@7ec08cd9b Merge pull request #1365 from marshallward/corad_vec_v2 - NOAA-GFDL/MOM6@dc66dd8a7 Merge branch 'dev/gfdl' into corad_vec_v2 - NOAA-GFDL/MOM6@c5c74419d Merge pull request #1364 from jkrasting/downsampled_diag_fix - NOAA-GFDL/MOM6@a5fb36503 Merge branch 'dev/gfdl' into downsampled_diag_fix - NOAA-GFDL/MOM6@d485a5123 Merge pull request #1363 from Hallberg-NOAA/SIS2_infra_support - NOAA-GFDL/MOM6@b413f25c5 Merge branch 'SIS2_infra_support' of github.com:Hallberg-NOAA/MOM6 into SIS2_infra_support - NOAA-GFDL/MOM6@358da7cc4 Corrected comments describing CT_copy_data - NOAA-GFDL/MOM6@ad0bc3c41 Merge branch 'dev/gfdl' into SIS2_infra_support - NOAA-GFDL/MOM6@fae570d0a Merge branch 'main' into main_to_gfdl - NOAA-GFDL/MOM6@5f063044c Fixed downsampling summation for more diag types - NOAA-GFDL/MOM6@c549ae9d9 Merge pull request #1358 from NOAA-GFDL/dev-gfdl-main-candidate-2021-03-26 - NOAA-GFDL/MOM6@ad372fdc2 Merge branch 'dev/gfdl' into SIS2_infra_support - NOAA-GFDL/MOM6@d1dc6b5ba Coriolis: Improved coradcalc vectorization - NOAA-GFDL/MOM6@2b6d3e115 Merge pull request #1362 from marshallward/horvisc_diag_to_stack - NOAA-GFDL/MOM6@9792b2346 Fixed downsampling for x:sum y:point z:point diags - NOAA-GFDL/MOM6@665cd9a3b Merge branch 'dev/gfdl' into horvisc_diag_to_stack - NOAA-GFDL/MOM6@b6c7fdb02 change default value of use_mommesh as true - NOAA-GFDL/MOM6@6d4a48390 Merge pull request #1360 from Hallberg-NOAA/fewer_timelevels - NOAA-GFDL/MOM6@3c1cb2efd +Add MOM_domains interfaces needed by SIS2 - NOAA-GFDL/MOM6@cfa59aab1 +Add coupler_types interfaces needed by SIS2 - NOAA-GFDL/MOM6@97f111779 Merge branch 'dev/gfdl' into fewer_timelevels - NOAA-GFDL/MOM6@813fc7975 Merge pull request #1359 from Hallberg-NOAA/FMS2_io_writes - NOAA-GFDL/MOM6@2ffea27be MOM_hor_visc: Variables moved to stack - NOAA-GFDL/MOM6@4fd380747 Merge branch 'dev/gfdl' into FMS2_io_writes - NOAA-GFDL/MOM6@c62d51f9d Remove inappropriate timelevel arguments - NOAA-GFDL/MOM6@13f1e70f5 Merge pull request #1356 from GEOS-ESM/bugfix/sanAkel/output-b-grid-currents - NOAA-GFDL/MOM6@6c2b944e2 Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents - NOAA-GFDL/MOM6@67b03e324 Merge pull request #1353 from Hallberg-NOAA/less_checksums - NOAA-GFDL/MOM6@5669d4360 Merge branch 'dev/gfdl' into less_checksums - NOAA-GFDL/MOM6@b044be8ee Merge branch 'dev/gfdl' into FMS2_io_writes - NOAA-GFDL/MOM6@fe9b2a106 Merge pull request #1352 from Hallberg-NOAA/FMS2_io - NOAA-GFDL/MOM6@f6105cb22 Merge branch 'dev/gfdl' into FMS2_io - NOAA-GFDL/MOM6@95ad9372b Fix distributed reads of checksums using FMS2_io - NOAA-GFDL/MOM6@81c48cbf6 Merge pull request #5 from marshallward/FMS2_io_writes - NOAA-GFDL/MOM6@ba643bde2 Explicit domain decomposition of horizontal axes - NOAA-GFDL/MOM6@7bdecbc62 Add missing ".nc" to FMS2 output filenames - NOAA-GFDL/MOM6@fad7e0d4a Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents - NOAA-GFDL/MOM6@17afc2b5e A call to pass_vector(...) is needed to correctly do a halo exchange before getting currents in A- or B-grid staggering. Now added. - NOAA-GFDL/MOM6@3fe07d4c6 +Move FMS2 read helper routines into MOM_io_infra - NOAA-GFDL/MOM6@2579d0771 Merge pull request #4 from gustavo-marques/less_checksums_mct_nuopc - NOAA-GFDL/MOM6@66ac81057 Only write checksums from root PE MCT/NUOPC caps - NOAA-GFDL/MOM6@84d5e2176 +FMS2 reads for ints & MOM_read_data_fms2 cleanup - NOAA-GFDL/MOM6@4843c6c4d Merge branch 'dev/gfdl' into FMS2_io - NOAA-GFDL/MOM6@03e174e14 Removed FMS2 MOM_axis and MOM_write_field_fms2 - NOAA-GFDL/MOM6@255233ba3 Added code to write via FMS2 interfaces - NOAA-GFDL/MOM6@0fdc5c438 Correct warnings from categorize_axis - NOAA-GFDL/MOM6@f89ddeaa8 +Add edge_axis argument to write_metadata_axis - NOAA-GFDL/MOM6@ee0152f26 +Separate MOM_interp_infra axistype from MOM_io - NOAA-GFDL/MOM6@09173f7dc Only write checksums from root PE for FMS_cap - NOAA-GFDL/MOM6@30b057116 Merge branch 'dev/gfdl' into FMS2_io - NOAA-GFDL/MOM6@91232095d Merge branch 'dev/gfdl' into FMS2_io - NOAA-GFDL/MOM6@aab2ad645 +Add ability to read fields via FMS2 interfaces - NOAA-GFDL/MOM6@23a78d2f6 Clean up in MOM_restart.F90 - NOAA-GFDL/MOM6@c68fedfea +Change arguments to MOM_register_variable_axes - NOAA-GFDL/MOM6@0ba1aa53e +Simplified read_data_fms2 and write_field_fms2 - NOAA-GFDL/MOM6@f2459ec21 Merge branch 'user/jml/add_fms2io_to_MOM_restart' of https://github.com/wrongkindofdoctor/MOM6 into FMS2_io - NOAA-GFDL/MOM6@a07757314 Explicitly set (1x1) io_domain as a default - NOAA-GFDL/MOM6@d4531ca37 Duplicated infra/FMS1 into infra/FMS2 - NOAA-GFDL/MOM6@f806579bc Correct module use statements in infra/FMS1 - NOAA-GFDL/MOM6@2e46ea6d7 removed errant .true. in save_restart call - NOAA-GFDL/MOM6@809b3ac52 added local logical variables to save restart wrapper that are set using the use_fms2 and write_ic flags if present to avoid invalid memory reference error added str_len argument to register_variable_attribute calls - NOAA-GFDL/MOM6@a74c7eaba changed FMS release to 2020.03-beta1 - NOAA-GFDL/MOM6@5c2daa5da converted save_restart and restore_state to interface that call versions of the routines with the fms-io or fms2-io interfaces added module use statments for fms2_io and MOM_io helper routines to MOM_restart added use_fms2=.true. arguments to save_restart and restore_state calls added write_ic=.true. to the save_restart call in MOM.F90 - NOAA-GFDL/MOM6@40047fa50 Merge pull request #66 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@c8695c621 Merge pull request #65 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@0cf3cb9c9 Merge pull request #64 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@de7f95a57 Merge pull request #63 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@50c353935 Merge pull request #62 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@cbdcf8a52 Create hola_tierra.yml - NOAA-GFDL/MOM6@763b17650 Merge pull request #61 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@ff3412651 Merge pull request #60 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@cea55fec4 Merge pull request #59 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@b8eee455f Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6 into dev/gfdl - NOAA-GFDL/MOM6@46b8f0fd5 Merge pull request #58 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@ff1a27f59 Merge pull request #57 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@496617cb1 Merge pull request #56 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@e9281f40e Merge pull request #55 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@4a5613400 Merge pull request #54 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@86c2a7dfa Merge pull request #53 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@c24535733 Merge pull request #52 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@8d7be6866 Merge pull request #51 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@7adcc9037 Merge pull request #50 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@aff2a13ab Merge pull request #49 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@477d9f85d Merge pull request #48 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@cee0a2166 Merge pull request #47 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@12dccaf8a Merge pull request #46 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@7dbca83ff Merge pull request #44 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@162ca970b Merge pull request #43 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@abaf004cb Merge pull request #42 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@075ab81e5 Merge pull request #41 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@e072bc7cc Merge in latest dev/gfdl updates (#40) - NOAA-GFDL/MOM6@cae4cfd05 Merge branch 'dev/gfdl' of github.com:wrongkindofdoctor/MOM6 into dev/gfdl - NOAA-GFDL/MOM6@ece60c11e Merge branch 'NOAA-GFDL-dev/gfdl' into dev/gfdl - NOAA-GFDL/MOM6@3e27e4793 Merge branch 'dev/gfdl' of git://github.com/NOAA-GFDL/MOM6 into NOAA-GFDL-dev/gfdl - NOAA-GFDL/MOM6@59109032e Merge pull request #38 from wrongkindofdoctor/revert-37-dev/gfdl - NOAA-GFDL/MOM6@3c15a0c11 Revert "Merge in dev/gfdl updates (#37)" - NOAA-GFDL/MOM6@855d7069d Merge in dev/gfdl updates (#37) - NOAA-GFDL/MOM6@2c32568b7 merge in latest dev/gfdl updates (#36) - NOAA-GFDL/MOM6@09bcebcfe Merge pull request #35 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@124a071e4 Merge pull request #33 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@a427676bd Merge pull request #32 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@0b874f32c Merge pull request #31 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@a5386da98 Merge pull request #30 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@5b2852cde Merge pull request #28 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@22c586562 Merge pull request #27 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@f9b5a7fca Merge pull request #26 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@577208343 Merge pull request #25 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@5589d8cc3 Merge pull request #24 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@aa11e1f66 Merge pull request #23 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@b5e5c48a6 Merge pull request #22 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@911d0a240 Merge pull request #21 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@601eb679c Merge pull request #20 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@b4fd53be9 Merge pull request #19 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@f6879f425 Merge pull request #18 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@139ab1fc0 Merge pull request #17 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@a0c80dcf3 Merge pull request #16 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@42cca4f46 Merge pull request #15 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@a1c556b7f Merge pull request #14 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@f5bc54b67 Merge pull request #13 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@6ffc8976f Merge pull request #12 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@30d35a3c6 Merge pull request #11 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@1304880fb Merge pull request #10 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@522069b31 Merge pull request #9 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@1bbc8de13 Merge pull request #8 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@9aa2aaeb1 Merge pull request #7 from NOAA-GFDL/dev/gfdl - NOAA-GFDL/MOM6@b7f50fcbf Merge remote-tracking branch 'GFDL_MOM6/dev/gfdl' into dev/gfdl merge in latest MOM updates * GFDL_MOM6/dev/gfdl: (220 commits) Update cache dir for /lustre/f2 Update cache dir for /lustre/f2 Calculate height-related diagnostics in Z Set coord_adapt and coord_slight parameters in H Corrected comments in build_zlike_column +Pass max_depth to initialize_regridding in Z Corrected comments in build_sigma_column Combined scaling factors in build_adapt_column Clarified comments in Idealized_Hurricane +Recast MOM_diag_to_Z to work in units of Z +Recast MOM_ALE_sponge to work in units of Z +Added m_to_Z arg to horiz_interp_and_extrap_tracer Find energetic_PBL column height changes in Z +Find diapyc_energy_req column height changes in Z Use local variables to rescale in MOM_Point_Accel Recast MOM_sum_output to work in units of Z Simplify MOM_diagnostics code +Rescale depth inside of MEKE_lengthScales_0d +Add conversion argument to register_static_field Rescale values reported by PointAccel ... - NOAA-GFDL/MOM6@975262dc9 Merge pull request #5 from NOAA-GFDL/dev/gfdl
Hallberg-NOAA
added a commit
that referenced
this pull request
Feb 20, 2022
Updated the version of MOM6 that MOM6-examples points to, and updated those MOM_parameter_doc.all files to reflect corrections in the logging of runtime options. All answers in the MOM6-examples test suite and TC tests are bitwise identical, but answers will change if the GME scheme is used. The non-merge MOM6 commits that are included in this update are: - NOAA-GFDL/MOM6@32e1ecf45 Fixes issues with the GME code and get_param calls for Leith options (#65) - NOAA-GFDL/MOM6@e84160915 remove unnecessary optional flag - NOAA-GFDL/MOM6@c166358b2 Add optional argument to FMS2 version of get_field_size - NOAA-GFDL/MOM6@fc5253f73 (*)Correct memory declarations in MOM_regridding - NOAA-GFDL/MOM6@75bf521e2 +Move MOM_scaling_check.F90 to MOM_unique_scales.F90 - NOAA-GFDL/MOM6@56401b637 +Add MOM_check_scaling.F90 and MOM_scaling_check.F90 - NOAA-GFDL/MOM6@65998cd31 Esmg docs (#57) - NOAA-GFDL/MOM6@e63c4055a Fix soft-conventional index capitalization in horizontal_viscosity() - NOAA-GFDL/MOM6@03a247e43 Avoid divide by zero in horizontal_viscosity() with better_bound_kh - NOAA-GFDL/MOM6@9f0018fe3 +(*)Change the remapping dzInterface argument sign - NOAA-GFDL/MOM6@6da5c9b97 Standardize code in calc_sfc_displacement - NOAA-GFDL/MOM6@d838ccd80 Clean up non-standard syntax and whitespace - NOAA-GFDL/MOM6@f7a2254f3 Rewrite horizontal regridding to use netCDF wrapper functions (#48)
marshallward
added a commit
that referenced
this pull request
Jul 7, 2022
- NOAA-GFDL/MOM6@3b80e443d Follow MOM6 code style guide - NOAA-GFDL/MOM6@0c1e89a2c Add missing units - NOAA-GFDL/MOM6@0e8acd90b +(*)Fix a scaling bug in MOM_horizontal_regridding - NOAA-GFDL/MOM6@005c46066 Impose standard indentation in nuopc_cap code - NOAA-GFDL/MOM6@3b05cdfdb Impose standard indentation in most driver code - NOAA-GFDL/MOM6@9b1d382ae Style compliance in external/ODA_hooks code - NOAA-GFDL/MOM6@1d8fb5091 +Style compliance in external/drifters code - NOAA-GFDL/MOM6@84d78a661 +Revised stochastics code for style compliance - NOAA-GFDL/MOM6@8f97b3d2f Corrections to cell-averaged density computation (#213) - NOAA-GFDL/MOM6@41a278b81 Candidate branch main->dev/gfdl - NOAA-GFDL/MOM6@e73c231fb +Set thickness_units for use by deta_dt diagnostic - NOAA-GFDL/MOM6@2cd228fbe Adds conditional for setting fluxes%heat_content_* - NOAA-GFDL/MOM6@fc3ab450b Avoid rotating arrays that are not associated - NOAA-GFDL/MOM6@f81414708 Add missing logical to control allocation of fluxes - NOAA-GFDL/MOM6@b9b67a838 Changes needed for when enthalpy is via coupler - NOAA-GFDL/MOM6@fc05abe21 Modifications needed for when enthalpy is via CPL - NOAA-GFDL/MOM6@7924fbaee Modify log/description of ENTHALPY_FROM_COUPLER - NOAA-GFDL/MOM6@b7665f481 Heat conservation when enthalpy is via coupler - NOAA-GFDL/MOM6@72daf7b0c Add option to receive enthalpy fluxes via coupler - NOAA-GFDL/MOM6@861a8f14d Use ODA_2018_ANSWERS to specify ODA remapping - NOAA-GFDL/MOM6@48ae48ae7 Remove unused variables - NOAA-GFDL/MOM6@684878ee4 Add a deta_dt diagnostic to the split BT/BC mode (#99) - NOAA-GFDL/MOM6@f6fc6ce17 FMS2: get_field_sizes with FMS1 emulation - NOAA-GFDL/MOM6@f54338ad1 Fix non-standard white space (#109) - NOAA-GFDL/MOM6@d729c679a +Remove append_substring - NOAA-GFDL/MOM6@d8bc9639e Removal of non-standard extensions - NOAA-GFDL/MOM6@7a147ad41 +Document or eliminate undocumented interfaces - NOAA-GFDL/MOM6@e9fdf5de3 Standardized syntax in mask2d logical tests - NOAA-GFDL/MOM6@c150f37a1 Correct --with-driver args for coupled tests (#106) - NOAA-GFDL/MOM6@6809ee3a4 Fix tides_CS attribute in unsplit mode (#103) - NOAA-GFDL/MOM6@28ff86e4e +Convective adjustment outside regridding_main - NOAA-GFDL/MOM6@fd2060cda +Add Hybgen regridding - NOAA-GFDL/MOM6@138396107 It would be good to initialize CS%answers_2018. - NOAA-GFDL/MOM6@8d92579b2 Deleted an unused function, made public OBC funcs. - NOAA-GFDL/MOM6@9c22ff272 Taking out some unused OBC constants. - NOAA-GFDL/MOM6@3c7bd19ee More cleaning up for issue #54 - NOAA-GFDL/MOM6@d2fb2d0ed MOM_random: Set mask with bits rather than integer - NOAA-GFDL/MOM6@a5350219b Mixed layer restrat statement function refactor - NOAA-GFDL/MOM6@936b11fb6 Format string fixes; function index reorder - NOAA-GFDL/MOM6@4b218c07a Tweaks in response to Hallberg's comments. - NOAA-GFDL/MOM6@57a1a8ae2 Rest of fix for issue #54. - NOAA-GFDL/MOM6@41757c7a5 Fix the rebase - NOAA-GFDL/MOM6@f50551ce4 Fix to Z_RESCALE bug in ePBL. - NOAA-GFDL/MOM6@1e6924e03 More fixes for issue #54. - NOAA-GFDL/MOM6@24f412d77 Part of the fix for issue #54. - NOAA-GFDL/MOM6@6f48b9d1d Oops, more cleanup. - NOAA-GFDL/MOM6@1853352a6 correction on type in directory name - NOAA-GFDL/MOM6@28003a8f7 Adding in that SAL commit again. - NOAA-GFDL/MOM6@4a9162839 Undoing some patches from others - NOAA-GFDL/MOM6@11fa11406 Done with EPBL docs? - NOAA-GFDL/MOM6@918742bbb Working on boundary layer docs. - NOAA-GFDL/MOM6@a180d3316 return a more accurate error message in MOM_stochasics - NOAA-GFDL/MOM6@1428a36ac Several little things, one is making sponge less verbose. - NOAA-GFDL/MOM6@aac6b75dd update to gfdl 20210806 (#74) - NOAA-GFDL/MOM6@71f7354d9 add comments - NOAA-GFDL/MOM6@8775c6d41 revert logic wrt increments - NOAA-GFDL/MOM6@64e83b7aa add logic to remove incrments from restart if outside IAU window - NOAA-GFDL/MOM6@3e573eb11 add write_stoch_restart_ocn to MOM_stochastics - NOAA-GFDL/MOM6@8382652d5 doxygen cleanup - NOAA-GFDL/MOM6@97bbdbf6f move stochastics to external directory - NOAA-GFDL/MOM6@199126eb7 stochastic physics re-write - NOAA-GFDL/MOM6@0932b9ec1 remove debug statements - NOAA-GFDL/MOM6@ebe9d1f6f remove PE_here from mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@077413af9 clean up of mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@b12c09cbb revert MOM_domains.F90 - NOAA-GFDL/MOM6@80fdfb4e8 remove stochastics container - NOAA-GFDL/MOM6@65e0e71bb clean up of code for MOM6 coding standards - NOAA-GFDL/MOM6@121ce71b3 correct coupled_driver/ocean_model_MOM.F90 and other cleanup - NOAA-GFDL/MOM6@045d5c2db make stochastics optional - NOAA-GFDL/MOM6@f874d1113 clean up MOM_domains - NOAA-GFDL/MOM6@390fee8d0 re-write of stochastic code to remove CPP directives - NOAA-GFDL/MOM6@48354da37 fix non stochastic ePBL calculation - NOAA-GFDL/MOM6@583c6ae1e clean up code - NOAA-GFDL/MOM6@878543d22 clean up debug statements - NOAA-GFDL/MOM6@095c36ca4 additions for stochy restarts - NOAA-GFDL/MOM6@6ff36ec6d add stochy_restart writing to mom_cap - NOAA-GFDL/MOM6@cefdb81ed Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@2f5d83d3c Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@b6ac287b6 Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@45acf37f1 cleanup of code and enhancement of ePBL perts - NOAA-GFDL/MOM6@e853f839b additions for stochastic physics and ePBL perts - NOAA-GFDL/MOM6@78c574be1 Add missing h_neglect (#98) - NOAA-GFDL/MOM6@edd3f9c68 +Corrected units in dumbbell get_param calls - NOAA-GFDL/MOM6@db59e142d MOM_neutral_diffusion code cleanup - NOAA-GFDL/MOM6@063ef75fa Minor get_param call reformatting - NOAA-GFDL/MOM6@6bfd073b2 +Avoid nonsensical units descriptions - NOAA-GFDL/MOM6@c626cc464 MOM_internal_tides diagnostic code simplification - NOAA-GFDL/MOM6@305f74473 Rescale new_depth in apply_topography_edits_from_file - NOAA-GFDL/MOM6@39206d91b Simplify diagnostics using global_area_integral - NOAA-GFDL/MOM6@a6992a9d6 Convert global_area_mean diagnostics when writing - NOAA-GFDL/MOM6@9c4363ed2 +Add optional conversion argument to register_diag_scalar - NOAA-GFDL/MOM6@356671c20 +Refactor writing the vertical_coordinate file - NOAA-GFDL/MOM6@08582eead add residual loss term for internal tides (#95) - NOAA-GFDL/MOM6@4c5e98e1b Error handler support - NOAA-GFDL/MOM6@2ac64b39c Set INPUT_STR_LENGTH to 1024 - NOAA-GFDL/MOM6@4e94c5d6a Reduce the populate_param_data memory footprint - NOAA-GFDL/MOM6@3b5d2641a Support arbitrarily long parameter spec lines - NOAA-GFDL/MOM6@97331e705 +Better multi-line parameter specification handling - NOAA-GFDL/MOM6@8bf9abbad reworked algebra corner spread, rotation parenthesis (#90) - NOAA-GFDL/MOM6@ce22d7aea add missing shared variable - NOAA-GFDL/MOM6@115d71477 Ice dynamics (#80) - NOAA-GFDL/MOM6@7c3f31bd4 +(*)Write unscaled MOM6 restart files - NOAA-GFDL/MOM6@11d03b13b +Add unit conversion capability for restarts - NOAA-GFDL/MOM6@966d50f15 (*)Minor MOM_hor_visc code cleanup - NOAA-GFDL/MOM6@ab4d226bb +(*)MOM_hor_visc bug fix and loop size cleanup - NOAA-GFDL/MOM6@8c6ae0eea Corrected the license on RGC_initialization.F90 - NOAA-GFDL/MOM6@a002923ae (*)Fix rescaling in RGC_initialize_sponges - NOAA-GFDL/MOM6@14a28f477 Avoid copying the tracer registry in advect_tracer - NOAA-GFDL/MOM6@5a8590b03 +Add Laplacian diffusion of interface heights - NOAA-GFDL/MOM6@406bc59cd Merge remote-tracking branch 'alexandra/main' into dev/esmg - NOAA-GFDL/MOM6@9c341f06e Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@3675c2169 +Add Hybgen remapping options - NOAA-GFDL/MOM6@304294260 Fix nolibs build in CI pipeline - NOAA-GFDL/MOM6@d5601696e +Stop logging NEW_SPONGES - NOAA-GFDL/MOM6@6963b222d Add KPP nonlocal term to passive tracers (#202) - NOAA-GFDL/MOM6@efa503bd2 bugfix: static h_new shape remaining_transport_sum - NOAA-GFDL/MOM6@b4a67c1ad Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@464046138 (*)Avoid negative thicknesses in mixed_layer_restrat - NOAA-GFDL/MOM6@9a01cd501 +Add ALE options mimicking Hycom - NOAA-GFDL/MOM6@9caa7010f (+) Refactor of MOM_file_parser - NOAA-GFDL/MOM6@fa2832c11 +(*)Rescale variables with homogenize_forcing - NOAA-GFDL/MOM6@b3e80f73f +(*)Add tmp_scale arguments to global_area_mean - NOAA-GFDL/MOM6@a468bee03 Removed trailing white space - NOAA-GFDL/MOM6@a0d02387e (*)+Use reproducing stocks for all tracer packages - NOAA-GFDL/MOM6@1bf82205a (*)+Reproducing tracer stocks - NOAA-GFDL/MOM6@8197cea79 Use global_mass_integral in lateral_bdry_diff - NOAA-GFDL/MOM6@9c7bf292d +Add global_mass_int_EFP - NOAA-GFDL/MOM6@d46dbc775 Report mean temperature from MOM_state_stats() - NOAA-GFDL/MOM6@65b2c8249 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/MOM6@149073fea Remove hard-wired parameter in adjustEtaToFitBathymetry (#69) - NOAA-GFDL/MOM6@32e1ecf45 Fixes issues with the GME code and get_param calls for Leith options (#65) - NOAA-GFDL/MOM6@098f5c9d9 fix u10_sqr dimensional scaling - NOAA-GFDL/MOM6@b39648adc merge with latest main (2020feb17) and resolve conflicts - NOAA-GFDL/MOM6@e84160915 remove unnecessary optional flag - NOAA-GFDL/MOM6@c166358b2 Add optional argument to FMS2 version of get_field_size - NOAA-GFDL/MOM6@fc5253f73 (*)Correct memory declarations in MOM_regridding - NOAA-GFDL/MOM6@035ae5c85 Misc dimensional consistency fixes in regridding, remapping, and MEKE routines - NOAA-GFDL/MOM6@75bf521e2 +Move MOM_scaling_check.F90 to MOM_unique_scales.F90 - NOAA-GFDL/MOM6@56401b637 +Add MOM_check_scaling.F90 and MOM_scaling_check.F90 - NOAA-GFDL/MOM6@c18185422 fix line lenght error in MOM_wave_interface - NOAA-GFDL/MOM6@ebb643af9 Oops, more cleanup. - NOAA-GFDL/MOM6@65cccb7a0 correction on type in directory name - NOAA-GFDL/MOM6@45d615191 Adding in that SAL commit again. - NOAA-GFDL/MOM6@3dbf2f58d Undoing some patches from others - NOAA-GFDL/MOM6@71908c8fd Done with EPBL docs? - NOAA-GFDL/MOM6@b7b4141a6 Working on boundary layer docs. - NOAA-GFDL/MOM6@c3ff425ce return a more accurate error message in MOM_stochasics - NOAA-GFDL/MOM6@348a81b63 Several little things, one is making sponge less verbose. - NOAA-GFDL/MOM6@9221b5d50 update to gfdl 20210806 (#74) - NOAA-GFDL/MOM6@59e733f3e add comments - NOAA-GFDL/MOM6@15e402940 revert logic wrt increments - NOAA-GFDL/MOM6@78b8d7919 add logic to remove incrments from restart if outside IAU window - NOAA-GFDL/MOM6@a5d90655d add write_stoch_restart_ocn to MOM_stochastics - NOAA-GFDL/MOM6@e91c96609 doxygen cleanup - NOAA-GFDL/MOM6@cf1d29628 move stochastics to external directory - NOAA-GFDL/MOM6@493717a35 stochastic physics re-write - NOAA-GFDL/MOM6@a67bc78a2 remove debug statements - NOAA-GFDL/MOM6@e2431bc81 remove PE_here from mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@ea36db238 clean up of mom_ocean_model_nuopc.F90 - NOAA-GFDL/MOM6@4c931094f revert MOM_domains.F90 - NOAA-GFDL/MOM6@c7531a75f remove stochastics container - NOAA-GFDL/MOM6@08dc1a44b clean up of code for MOM6 coding standards - NOAA-GFDL/MOM6@e80d5f57e correct coupled_driver/ocean_model_MOM.F90 and other cleanup - NOAA-GFDL/MOM6@0bf4ff0a1 make stochastics optional - NOAA-GFDL/MOM6@9e7029ca8 clean up MOM_domains - NOAA-GFDL/MOM6@58f1fe98f re-write of stochastic code to remove CPP directives - NOAA-GFDL/MOM6@15dde3622 fix non stochastic ePBL calculation - NOAA-GFDL/MOM6@49111ff9f clean up code - NOAA-GFDL/MOM6@0c48bfc6a clean up debug statements - NOAA-GFDL/MOM6@becb4420e additions for stochy restarts - NOAA-GFDL/MOM6@36ce2d108 add stochy_restart writing to mom_cap - NOAA-GFDL/MOM6@5f6973b4d Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@c48a46ae0 Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@a0e5b56af Update MOM_diabatic_driver.F90 - NOAA-GFDL/MOM6@a534541c5 cleanup of code and enhancement of ePBL perts - NOAA-GFDL/MOM6@0add693a8 additions for stochastic physics and ePBL perts - NOAA-GFDL/MOM6@a00b7799f Merge remote-tracking branch 'NCAR/surfbands_refactor' into BGR_Stokes_DDT_Fixes - NOAA-GFDL/MOM6@dc59b117b Fixing restart issue with Stokes time tendency term. - NOAA-GFDL/MOM6@f89fd1351 Fixing diagnostic mode for vortex force correction term. - NOAA-GFDL/MOM6@58874a5f3 Updates to Stokes drift terms, primarily the pressure gradient routine. - NOAA-GFDL/MOM6@4f592f298 More changes for surfbands wave coupling: - for ustkb and vstkb, call pass_var, instead of pass_vector because they are on h grd. -remove unused ustk0 and vstk0 arrays. - correct the order of wave-related get param & allocate_forcing calls in nuopc cap. - add lamult flag to allocate_forcing_by_group because lamult should only be allocated if wave_method=="EFACTOR". - NOAA-GFDL/MOM6@28268d3e6 fixes in MOM_wave_interface array indices - NOAA-GFDL/MOM6@dc93bdeef Fixes for Stokes time tendency terms - NOAA-GFDL/MOM6@b619d38eb remove duplicate assignments of dvdx and dudy. These duplicate assignments incorrectly override dvdx and dudy when surfbands wave coupling is on. - NOAA-GFDL/MOM6@cb671d2c0 merge with latest dev/ncar and resolve conflicts - NOAA-GFDL/MOM6@d4c36a60a Fix openmp test by adding Stokes_VT to shr clause in MOM_CoriolisAdv. Also remove the Passive_Stokes_VF block since it's never set to true. - NOAA-GFDL/MOM6@e2ab77e99 initialize wave option flags to false - NOAA-GFDL/MOM6@c880a156a For the drivers calling MOM_wave_interface_init, add the optional waves_csp arg to initialize_MOM calls so as to ensure that the waves_csp is allocated. This commit also has several misc doxygen fixes. - NOAA-GFDL/MOM6@e7f628e17 refactoring and changes to write stokes drift profile to restart file when surfbands wave coupling mode is on. - NOAA-GFDL/MOM6@15c3d53de changes in the nuopc cap to support arbitrary stokes bands With these changes, arbitrary number of of partitioned stokes drift components may be imported from ww3 when coupled within cesm. After the planned unification of ww3 nuopc caps of CESM and EMC, the old (fixed) approach may be removed. - NOAA-GFDL/MOM6@eacd9d016 fix doxygen errors in surfbands_refactor branch - NOAA-GFDL/MOM6@a0d1d9982 Do not call get_Langmuir_Number if lamult is already provided via ww3 - NOAA-GFDL/MOM6@b1c341248 enclose stokes vorticity diag computations with Stokes_VF conditional - NOAA-GFDL/MOM6@824039dac enclose stokes vorticity diag computations with Stokes_VF conditional - NOAA-GFDL/MOM6@59a31f62c remove unnecessary ampersands from variable declarations - NOAA-GFDL/MOM6@dcf30ac50 merge pr1507 with dev/ncar and resolve conflicts in MOM_tidal_mixing - NOAA-GFDL/MOM6@6e94b699b disable the register of tidal mixing coeff diags when they are unavailable - NOAA-GFDL/MOM6@e3d190db3 In NUOPC cap, add ability to import fields with ungridded dimensions - NOAA-GFDL/MOM6@380a04090 Merge remote-tracking branch 'breichl/Stokes_Forces' into pstokes_wave_cpl_mehtod - NOAA-GFDL/MOM6@c5f1d442e Updating name of Stokes PGF routine to be more descriptive. - NOAA-GFDL/MOM6@a6de11c92 Remote application of Stokes tendency on thermodynamic step - NOAA-GFDL/MOM6@9fbdf11ec Finish incomplete merge in MOM_wave_interface. - NOAA-GFDL/MOM6@77084ecc9 Adding Stokes forces implementation and diags. SIS2: Replace MOM_memory.h with SIS2_memory.h - NOAA-GFDL/SIS2@55dbb3a Replace MOM_memory.h with SIS2_memory.h - NOAA-GFDL/SIS2@33589c6 Fixed the syntax of new comments in PR #173 - NOAA-GFDL/SIS2@164e404 Getting OBCs with MERGED_CONTINUITY to work - NOAA-GFDL/SIS2@d62188d OBC's for C-grid stress. - NOAA-GFDL/SIS2@c84a83b Start of ice OBCs - it compiles. - NOAA-GFDL/SIS2@2ac240a Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/SIS2@a9884b8 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg - NOAA-GFDL/SIS2@3399a73 Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg
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Provides FMS2 as an option via CPP macro `USE_FMS2_IO` - NOAA-GFDL/icebergs@6a8944f Merge branch 'fms_test' into dev/gfdl, which adds an fms2 build file for the icebergs driver, and the missing .nml for the footloose calving test. - NOAA-GFDL/icebergs@16c6772 Added build file for fms2. Added missing input.nml for the footloose test. Slight fix to icebergs_driver where mpp_exit was called too early. - NOAA-GFDL/icebergs@27b6d21 Merge pull request #65 from uramirez8707/use_fms2io - NOAA-GFDL/icebergs@c17de02 Patched FMS2-branch to work with FMS1 - NOAA-GFDL/icebergs@c292450 fix for ensemble runs - NOAA-GFDL/icebergs@2b78653 attempt to fix the doxygen ci - NOAA-GFDL/icebergs@6938cf5 Use fms2_io in icebergs_fms2_io instead of fms_io - NOAA-GFDL/icebergs@738b131 initial icebergs_io removal
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Since "ssu" and "ssv" diagnostics are no longer available in ocean_daily.nc the ��EddyKineticEnergy.py analysis script does not work anymore and there is no point to call it in MOM6_refineDiag.csh .