Optimize for better IO performance during BMI init config dataset generation #384
Workflow file for this run
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| # Test changes that have been pushed to the master and dev branches | |
| name: Intergration Tests | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| pull_request: | |
| branches: [ master, dev ] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # Run unit tests on Python | |
| integration_test_latest: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| # Service containers to run with `runner-job` | |
| services: | |
| # Label used to access the service container | |
| redis: | |
| # Docker Hub image | |
| image: bitnami/redis | |
| # Set health checks to wait until redis has started | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| -e REDIS_PASSWORD="DPXzqRqjhsXokOVQcPUqOJuzKePMsfUc" | |
| ports: | |
| # Maps port 6379 on service container to the host | |
| - 19639:6379 | |
| minio: | |
| image: bitnami/minio:2022.10.8 | |
| ports: | |
| - 9000:9000 | |
| - 9001:9001 | |
| options: >- | |
| -e MINIO_ROOT_USER="dmod" | |
| -e MINIO_ROOT_PASSWORD="password" | |
| -e MINIO_SERVER_ACCESS_KEY="dmod" | |
| -e MINIO_SERVER_SECRET_KEY="password" | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python Venv | |
| id: cache-python-venv | |
| uses: actions/cache@v1 | |
| with: | |
| path: dmod_venv | |
| key: dmod-venv-dir-${{ hashFiles('python/**/_version.py', '**/requirements*.txt') }} | |
| - name: Init Python Venv | |
| if: steps.cache-python-venv.outputs.cache-hit != 'true' | |
| run: | | |
| python3 -m venv dmod_venv | |
| . dmod_venv/bin/activate | |
| pip install --upgrade pip | |
| deactivate | |
| export PROJECT_ROOT=$(pwd) | |
| echo ${PROJECT_ROOT} | |
| ./scripts/update_package.sh --venv dmod_venv --no-service-packages --dependencies | |
| - name: Cache Package Checksums | |
| id: cache-packages-md5 | |
| uses: actions/cache@v1 | |
| with: | |
| path: package_md5s | |
| key: package_md5s-${{ hashFiles('python/**/*') }} | |
| - name: Update Individual Packages | |
| id: update-individual-packages | |
| run: | | |
| [ ! -d package_md5s ] && mkdir package_md5s | |
| set -e | |
| for p in `./scripts/run_tests.sh --list-packages --service-packages --quiet`; do | |
| _P_SIMPLE_NAME="`basename ${p}`" | |
| _P_MD5_FILE="package_md5s/${_P_SIMPLE_NAME}.md5" | |
| _P_EXPECTED_MD5="`find ${p} -type f -exec md5sum {} \; | sort -k 2 | md5sum`" | |
| if [ -e ${p}/setup.py ]; then | |
| if [ '${{ steps.cache-python-venv.outputs.cache-hit }}' = 'true' ]; then | |
| if [ -e ${_P_MD5_FILE} ]; then | |
| if [ "`cat ${_P_MD5_FILE}`" = "${_P_EXPECTED_MD5}" ]; then | |
| echo "Package checksum file '${_P_MD5_FILE}' matches expected" | |
| else | |
| echo "Package checksum file '${_P_MD5_FILE}' contents do not match; updating" | |
| ./scripts/update_package.sh --venv dmod_venv ${p} | |
| fi | |
| else | |
| echo "Creating package checksum file '${_P_MD5_FILE}'" | |
| echo "${_P_EXPECTED_MD5}" > ${_P_MD5_FILE} | |
| fi | |
| else | |
| echo "Creating package checksum file '${_P_MD5_FILE}'" | |
| echo "${_P_EXPECTED_MD5}" > ${_P_MD5_FILE} | |
| fi | |
| fi | |
| done | |
| set +e | |
| - name: Cache SSL Setup | |
| id: cache-ssl-setup | |
| uses: actions/cache@v1 | |
| with: | |
| path: ssl | |
| key: dmod-ssl-setup | |
| # Set up the SSL directory | |
| - name: Setup SSL | |
| if: steps.cache-ssl-setup.outputs.cache-hit != 'true' | |
| run: | | |
| mkdir ssl | |
| mkdir ssl/local | |
| mkdir ssl/requestservice | |
| mkdir ssl/requests | |
| mkdir ssl/scheduler | |
| ./scripts/gen_cert.sh -d ssl/local -email dmod_gh_action@fake.gov | |
| cp -a ssl/local/*.pem ssl/requestservice/. | |
| cp -a ssl/local/*.pem ssl/requests/. | |
| cp -a ssl/local/*.pem ssl/scheduler/. | |
| - name: Echo dependency versions | |
| run: | | |
| . dmod_venv/bin/activate | |
| python3 -m pip freeze | |
| deactivate | |
| timeout-minutes: 1 | |
| - name: Run Tests | |
| run: | | |
| . dmod_venv/bin/activate | |
| python3 -m pip install pytest | |
| python3 -m pytest -o python_files="it_*.py" -o env_vars='IT_REDIS_CONTAINER_PASS="DPXzqRqjhsXokOVQcPUqOJuzKePMsfUc" IT_REDIS_CONTAINER_HOST_PORT=19639 MODEL_EXEC_ACCESS_KEY=dmod MODEL_EXEC_SECRET_KEY=password' |