Ufsrnr.v2.0 (#2)

* Added warm start forecast components.

* Updated README.md.

* Added C96L127 JCSDA JEDI and NCEP GSI warm-start configurations.

* Updated coupled model configuration.

* Added C96L127 uncoupled cold-start configuration.

* Updated path.

* Added uncoupled C96L127 configuration.

* Updated v1.0 documentation.

* Removed unnecessary information.

ufsrnr.v1.0/C96L64/coupled/cold-start/forecast/cntrl/med_modelio.nml

@@ -1,4 +1,3 @@
-! File created from /scratch2/BMC/gsienkf/Henry.Winterbottom/UFS-RNR.prerelease.v1.0.6/parm/atmos/med_modelio.nml.tmpl.
 &pio_inparm
   pio_netcdf_format = "64bit_offset"
   pio_numiotasks = -99
@@ -7,4 +6,3 @@
   pio_stride = 36
   pio_typename = "netcdf"
 /
-! Updated: 2022-02-23 07:25:38.

ufsrnr.v1.0/C96L64/coupled/warm-start/forecast/cntrl/med_modelio.nml

@@ -1,4 +1,3 @@
-! File created from /scratch2/BMC/gsienkf/Henry.Winterbottom/UFS-RNR.prerelease.v1.0.6/parm/atmos/med_modelio.nml.tmpl.
 &pio_inparm
   pio_netcdf_format = "64bit_offset"
   pio_numiotasks = -99
@@ -7,4 +6,3 @@
   pio_stride = 36
   pio_typename = "netcdf"
 /
-! Updated: 2022-02-23 07:25:38.

ufsrnr.v2.0/C96L127/coupled/cold-start/forecast/cntrl/forecast/cntrl/INPUT/MOM_override

@@ -0,0 +1,6 @@
+!VERBOSITY = 2 
+!INTERPOLATE_RES_FN = F
+RESTART_CHECKSUMS_REQUIRED = F
+#override REGRIDDING_COORDINATE_MODE = "Z*"
+#override ALE_COORDINATE_CONFIG="FILE:ocean_zstar_coord.nc,dz"
+#override USE_IDEAL_AGE_TRACER = F

ufsrnr.v2.0/C96L127/coupled/cold-start/forecast/cntrl/forecast/cntrl/INPUT/MOM_resolution

@@ -0,0 +1,13 @@
+DT = 900                       !   [s]
+                                ! The (baroclinic) dynamics time step.  The time-step that
+                                ! is actually used will be an integer fraction of the
+                                ! forcing time-step (DT_FORCING in ocean-only mode or the
+                                ! coupling timestep in coupled mode.)
+NIGLOBAL = 360           !
+                                ! The total number of thickness grid points in the
+                                ! x-direction in the physical domain. With STATIC_MEMORY_
+                                ! this is set in MOM_memory.h at compile time.
+NJGLOBAL = 320           !
+                                ! The total number of thickness grid points in the
+                                ! y-direction in the physical domain. With STATIC_MEMORY_
+                                ! this is set in MOM_memory.h at compile time.

ufsrnr.v2.0/C96L127/coupled/cold-start/forecast/cntrl/forecast/cntrl/data_table

@@ -0,0 +1 @@
+"OCN", "runoff", "runoff", "./INPUT/river_runoff.climo.nc", "none" ,  1.0

ufsrnr.v2.0/C96L127/coupled/cold-start/forecast/cntrl/forecast/cntrl/field_table

@@ -0,0 +1,42 @@
+# added by FRE: sphum must be present in atmos
+# specific humidity for moist runs
+ "TRACER", "atmos_mod", "sphum"
+           "longname",     "specific humidity"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+# prognostic cloud water mixing ratio
+ "TRACER", "atmos_mod", "liq_wat"
+           "longname",     "cloud water mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+ "TRACER", "atmos_mod", "rainwat"
+           "longname",     "rain mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+ "TRACER", "atmos_mod", "ice_wat"
+           "longname",     "cloud ice mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+ "TRACER", "atmos_mod", "snowwat"
+           "longname",     "snow mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+ "TRACER", "atmos_mod", "graupel"
+           "longname",     "graupel mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+# prognostic ozone mixing ratio tracer
+ "TRACER", "atmos_mod", "o3mr"
+           "longname",     "ozone mixing ratio"
+           "units",        "kg/kg"
+       "profile_type", "fixed", "surface_value=1.e30" /
+# prognostic subgrid scale turbulent kinetic energy
+ "TRACER", "atmos_mod", "sgs_tke"
+           "longname",     "subgrid scale turbulent kinetic energy"
+           "units",        "m2/s2"
+       "profile_type", "fixed", "surface_value=0.0" /
+# non-prognostic cloud amount
+ "TRACER", "atmos_mod", "cld_amt"
+           "longname",     "cloud amount"
+           "units",        "1"
+       "profile_type", "fixed", "surface_value=1.e30" /