update Ubuntu build from source instructions for adjoint solver #1190
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Updates the build from source instructions for Ubuntu 16.04 and 18.04 to enable support for the adjoint solver (#1167) which requires
autogradas a dependency. Also includes NLopt which is used in the tutorial examples. NLopt's pre-compiled binary (version2.4.2) frompipdid not seem to work (the install succeeded but the module itself would not load within Python) and so is built from source which requirescmake.Finally, building
h5pyfrom source to enable parallel HDF5 support required first installing Cython due to h5py/h5py#1533.