Issue277 auto generate api documentation

.gitignore

@@ -8,6 +8,7 @@ __pycache__
 .pytest_cache
 *.pyc
 data
+docs/_build/
 Pipfile.lock
 projects.cfg
 venv/

Pipfile

@@ -11,6 +11,9 @@ pytest-flask = "*"
 "pytest-pep8" = "*"
 swagger-tester = "*"
 bumpversion = "*"
+sphinx = "*"
+sphinx-rtd-theme = "*"
+pipenv-to-requirements = "*"
 
 [packages]
 "e1839a8" = {editable = true, path = "."}

autopep8.sh

@@ -2,9 +2,9 @@
 
 if [ "$1" = "-i" ]; then
 	echo "Running autopep8 in in-place mode."
-	exec autopep8 -i -j0 -a -a -r annif tests *.py
+	exec autopep8 -i -j0 -a -a -r annif tests docs *.py
 else
 	echo "Running autopep8 in diff mode. Use -i for in-place mode."
 	echo ""
-	exec autopep8 -d -a -a -r annif tests *.py
+	exec autopep8 -d -a -a -r annif tests docs *.py
 fi

docs/Makefile

@@ -0,0 +1,19 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/conf.py

@@ -0,0 +1,65 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# This file only contains a selection of the most common options. For a full
+# list see the documentation:
+# http://www.sphinx-doc.org/en/master/config
+
+# -- Path setup --------------------------------------------------------------
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+import os
+import re
+import sys
+sys.path.insert(0, os.path.abspath('..'))
+
+
+# -- Project information -----------------------------------------------------
+
+project = 'annif'
+copyright = '2017, University Of Helsinki (The National Library Of Finland)'
+author = 'Osma Suominen'
+
+# Get version number from GitHub tag
+release = re.sub(
+    '^v',
+    '',
+    os.popen('git describe --tags --abbrev=0').read().strip()
+)
+# The short X.Y version.
+version = release
+
+
+# -- General configuration ---------------------------------------------------
+
+master_doc = 'index'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = [
+    'sphinx.ext.autodoc'
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This pattern also affects html_static_path and html_extra_path.
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+
+# -- Options for HTML output -------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'sphinx_rtd_theme'
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']

docs/index.rst

@@ -0,0 +1,26 @@
+.. annif documentation master file, created by
+   sphinx-quickstart on Tue May 14 14:24:19 2019.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to Annif's API documentation!
+=====================================
+
+See `installation instructions <https://github.com/NatLibFi/Annif/blob/master/README.md>`_  and `Wiki pages <https://github.com/NatLibFi/Annif/wiki>`_ in GitHub, and also http://annif.org/.
+
+You are reading documentation for version |version|.
+
+
+.. toctree::
+   :maxdepth: 3
+   :caption: Annif API Reference:
+
+   source/annif
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`

docs/source/annif.analyzer.rst

@@ -0,0 +1,43 @@
+annif.analyzer package
+======================
+
+annif.analyzer.analyzer module
+------------------------------
+
+.. automodule:: annif.analyzer.analyzer
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.analyzer.simple module
+----------------------------
+
+.. automodule:: annif.analyzer.simple
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.analyzer.snowball module
+------------------------------
+
+.. automodule:: annif.analyzer.snowball
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.analyzer.voikko module
+----------------------------
+
+.. automodule:: annif.analyzer.voikko
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: annif.analyzer
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/annif.backend.rst

@@ -0,0 +1,83 @@
+annif.backend package
+=====================
+
+annif.backend.backend module
+----------------------------
+
+.. automodule:: annif.backend.backend
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.dummy module
+--------------------------
+
+.. automodule:: annif.backend.dummy
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.ensemble module
+-----------------------------
+
+.. automodule:: annif.backend.ensemble
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.fasttext module
+-----------------------------
+
+.. automodule:: annif.backend.fasttext
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.http module
+-------------------------
+
+.. automodule:: annif.backend.http
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.mixins module
+---------------------------
+
+.. automodule:: annif.backend.mixins
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.pav module
+------------------------
+
+.. automodule:: annif.backend.pav
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.tfidf module
+--------------------------
+
+.. automodule:: annif.backend.tfidf
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.backend.vw\_multi module
+------------------------------
+
+.. automodule:: annif.backend.vw_multi
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: annif.backend
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/annif.corpus.rst

@@ -0,0 +1,60 @@
+annif.corpus package
+====================
+
+
+annif.corpus.combine module
+---------------------------
+
+.. automodule:: annif.corpus.combine
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.corpus.convert module
+---------------------------
+
+.. automodule:: annif.corpus.convert
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.corpus.document module
+----------------------------
+
+.. automodule:: annif.corpus.document
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.corpus.skos module
+------------------------
+
+.. automodule:: annif.corpus.skos
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.corpus.subject module
+---------------------------
+
+.. automodule:: annif.corpus.subject
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+annif.corpus.types module
+-------------------------
+
+.. automodule:: annif.corpus.types
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: annif.corpus
+    :members:
+    :undoc-members:
+    :show-inheritance: