This should be initialized as gitmodule with name +ckc to use as a MATLAB package.
Navigate to the project repository root folder in a git terminal. From there, you can add this submodule using the following command:
git submodule add git@github.com:Neuro-Mechatronics-Interfaces/matlab_package__ckc.git +ckc
Any ckc.pre_process_<pipeline>.m function is the first step in the processing pipeline for using the DEMUSE tool.
This procedure puts the .poly5 (or .mat) recording file into the correct (.mat) format, which can then be loaded by the experiment/application-specific ckc.reader function.
Create your experiment/pipeline-specific pre-processing by copying ckc.template__pre_process.m into the +ckc folder, then renaming it as-appropriate and modifying the actual processing as appropriate based on the files that should go into the resultant .mat file.
Any ckc.reader_<pipeline>.m is a CKC file-reader. It should be used with any files generated from the corresponding ckc.pre_process_<pipeline>.m.
To create an experiment/pipeline-specific reader, copy ckc.template__reader.m to a new file in +ckc and name it to match your new pre-processing function.