Check for new model inference #39
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Check for new model inference | |
| on: | |
| push: | |
| paths: | |
| - "**/**/*.onnx" | |
| workflow_dispatch: | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| select-runner: | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| runner: ${{ steps.select_runner.outputs.runner }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Select runner | |
| id: select_runner | |
| run: | | |
| if [ "${{ github.repository }}" = "NeuroDesk/cvpr-sam-on-laptop-2024" ]; then | |
| echo "runner=self-hosted" >> $GITHUB_OUTPUT | |
| else | |
| echo "runner=ubuntu-22.04" >> $GITHUB_OUTPUT | |
| fi | |
| infer_new_model: | |
| needs: [select-runner] | |
| runs-on: ${{ needs.select-runner.outputs.runner }} | |
| steps: | |
| - name: Cleanup | |
| shell: bash | |
| run: | | |
| pwd | |
| ls -l | |
| rm -rf test_demo/runs | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Set up environment and data from osf | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install osfclient numpy nibabel pandas tqdm matplotlib scipy | |
| osf --project u8tny fetch test_demo.tar.xz | |
| osf --project u8tny fetch checkpoints/LiteMedSAM/litemedsam_encoder.opt.quant.onnx | |
| osf --project u8tny fetch checkpoints/LiteMedSAM/lite_medsam_decoder_optimized.onnx | |
| tar -xvf test_demo.tar.xz | |
| rm test_demo.tar.xz | |
| mv litemedsam_encoder.opt.quant.onnx lite_medsam_decoder_optimized.onnx work_dir/ | |
| ls | |
| - name: Run inference | |
| shell: bash | |
| run: | | |
| mkdir segs && chmod -R 777 ./* | |
| export DOCKER_IMAGE_NAME=hawken50 | |
| echo ${{ secrets.USERPWD }} | sudo -S docker build -f Dockerfile -t "$DOCKER_IMAGE_NAME" . | |
| echo ${{ secrets.USERPWD }} | sudo -S docker container run -m 8G --name "$DOCKER_IMAGE_NAME" --rm "$DOCKER_IMAGE_NAME":latest /bin/bash -c "ls" | |
| echo ${{ secrets.USERPWD }} | sudo -S docker container run -m 8G --name "$DOCKER_IMAGE_NAME" --rm "$DOCKER_IMAGE_NAME":latest /bin/bash -c "ls work_dir" | |
| ./evaluate.sh . | |
| - name: Display accuracy, efficiency, and running time | |
| run: | | |
| cat ./metrics.csv >> $GITHUB_STEP_SUMMARY | |
| cat ./running_time.csv >> $GITHUB_STEP_SUMMARY |