Automated segmentation of micrographs containing fluorescent cell soma
This is a small repo which aims to help a user of segment2p to train a model on their own data. The notebook walks you through training the model. Please follow the instruction here
The trained model can be used directly through the web interface: www.segment2p.co.il until April 28th 2020. The algorithm is described in this publication:
Dolev, N., et al. "Segment2P: Parameter-free automated segmentation of cellular fluorescent signals". bioRxiv (2019)