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ancient-sardinia

@authors: Joe Marcus and Harald Ringbauer

This repo holds the snakemake pipeline and scripts used to analyze ancient DNA data from Sardinia in Marcus et al. 2020.

Install python packages:

Either use conda, or install requeire packages with pip:

pip3 install --user scipy numpy pandas snakemake cython pysam click xlrd xlwt openpyxl XlsxWriter jupyter pyfaidx scikit-learn matplotlib seaborn scikit-allel shapely

submit-snakemake.sh # Loads conda environment with packages (if available)
submit-snakemake_noconda.sh # Loads python packages internally

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