🚀 Automatically rebuilt derived files (#2666)

Co-authored-by: GitHub Action <action@github.com>
OBOFoundry · Dec 17, 2024 · fa4b255 · fa4b255
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commit fa4b255
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Showing 5 changed files with 1,562 additions and 1,407 deletions.
diff --git a/_config.yml b/_config.yml
@@ -799,9 +799,9 @@ ontologies:
     label: Alexander Diehl
     orcid: 0000-0001-9990-8331
   dependencies:
-  - id: chebi
   - id: go
   - id: ncbitaxon
+  - id: omo
   - id: pato
   - id: pr
   - id: ro
@@ -829,29 +829,57 @@ ontologies:
     ontology_purl: http://purl.obolibrary.org/obo/cl.owl
     title: Main CL OWL edition
     uses:
-    - uberon
-    - chebi
     - go
-    - pr
-    - pato
     - ncbitaxon
+    - omo
+    - pato
+    - pr
     - ro
+    - uberon
   - derived_from: cl.owl
     description: Complete ontology, plus inter-ontology axioms, and imports modules
       merged in
     format: obo
     id: cl.obo
     ontology_purl: http://purl.obolibrary.org/obo/cl.obo
     title: CL obo format edition
+  - derived_from: cl.owl
+    description: Complete ontology, plus inter-ontology axioms, and imports modules
+      merged in
+    format: json
+    id: cl.json
+    ontology_purl: http://purl.obolibrary.org/obo/cl.json
+    title: CL OBOGraph-JSON format edition
+  - description: Basic version, no inter-ontology axioms
+    format: owl-rdf/xml
+    id: cl/cl-basic.owl
+    ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.owl
+    title: Basic CL
   - description: Basic version, no inter-ontology axioms
     format: obo
     id: cl/cl-basic.obo
     ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.obo
-    title: Basic CL
+    title: Basic CL (OBO version)
+  - description: Basic version, no inter-ontology axioms
+    format: json
+    id: cl/cl-basic.json
+    ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.json
+    title: Basic CL (OBOGraph-JSON version)
   - description: complete CL but with no imports or external axioms
+    format: owl-rdf/xml
     id: cl/cl-base.owl
     ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.owl
     title: CL base module
+  - description: complete CL but with no imports or external axioms
+    format: obo
+    id: cl/cl-base.obo
+    ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.obo
+    title: CL base module (OBO version)
+  - description: complete CL but with no imports or external axioms
+    format: json
+    id: cl/cl-base.json
+    ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.json
+    title: CL base module (OBOGraph-JSON version)
   publications:
   - id: https://www.ncbi.nlm.nih.gov/pubmed/27377652
     title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology

diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld
@@ -1088,15 +1088,15 @@
                 "orcid": "0000-0001-9990-8331"
             },
             "dependencies": [
-                {
-                    "id": "chebi"
-                },
                 {
                     "id": "go"
                 },
                 {
                     "id": "ncbitaxon"
                 },
+                {
+                    "id": "omo"
+                },
                 {
                     "id": "pato"
                 },
@@ -1134,13 +1134,13 @@
                     "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
                     "title": "Main CL OWL edition",
                     "uses": [
-                        "uberon",
-                        "chebi",
                         "go",
-                        "pr",
-                        "pato",
                         "ncbitaxon",
-                        "ro"
+                        "omo",
+                        "pato",
+                        "pr",
+                        "ro",
+                        "uberon"
                     ]
                 },
                 {
@@ -1151,18 +1151,55 @@
                     "ontology_purl": "http://purl.obolibrary.org/obo/cl.obo",
                     "title": "CL obo format edition"
                 },
+                {
+                    "derived_from": "cl.owl",
+                    "description": "Complete ontology, plus inter-ontology axioms, and imports modules merged in",
+                    "format": "json",
+                    "id": "cl.json",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/cl.json",
+                    "title": "CL OBOGraph-JSON format edition"
+                },
+                {
+                    "description": "Basic version, no inter-ontology axioms",
+                    "format": "owl-rdf/xml",
+                    "id": "cl/cl-basic.owl",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.owl",
+                    "title": "Basic CL"
+                },
                 {
                     "description": "Basic version, no inter-ontology axioms",
                     "format": "obo",
                     "id": "cl/cl-basic.obo",
                     "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.obo",
-                    "title": "Basic CL"
+                    "title": "Basic CL (OBO version)"
+                },
+                {
+                    "description": "Basic version, no inter-ontology axioms",
+                    "format": "json",
+                    "id": "cl/cl-basic.json",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.json",
+                    "title": "Basic CL (OBOGraph-JSON version)"
                 },
                 {
                     "description": "complete CL but with no imports or external axioms",
+                    "format": "owl-rdf/xml",
                     "id": "cl/cl-base.owl",
                     "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.owl",
                     "title": "CL base module"
+                },
+                {
+                    "description": "complete CL but with no imports or external axioms",
+                    "format": "obo",
+                    "id": "cl/cl-base.obo",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.obo",
+                    "title": "CL base module (OBO version)"
+                },
+                {
+                    "description": "complete CL but with no imports or external axioms",
+                    "format": "json",
+                    "id": "cl/cl-base.json",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.json",
+                    "title": "CL base module (OBOGraph-JSON version)"
                 }
             ],
             "publications": [