CurationStatus

Work in Progress. Issues: Does metadata include DL restrictions? Are these applicable only to the development version of OGMS (should we maintain a development version?)? Can these be mirrored in the OBO format?

Curation Status Annotations

• example to be eventually removed: (don't use, should all obsolete terms assigned this)
• metadata complete: (safe to use)
• metadata incomplete (use with caution, location in hierarchy may change or depends on suspect term)
• organizational term: (use with caution, use subtype or other ogms type wherever possible)
• pending final vetting: (safe to use)
• ready for release: (safe to use)
• to be repalced with external ontology term: (don't use)
• uncurated: (don't use)

Terms

• clinical finding (metadata complete)
• clinical history (metadata complete)
• clinical picture (metadata complete)
• image finding (metadata complete)
• laboratory finding (metadata complete)
• preclinical finding (metadata complete)
• symptom (organizational term)
• manifestation of a disease (pending final vetting)
• phenotype (requires discussion)
• sign (organizational term)
• clinical manifestation of a disease (pending final vetting)
• preclinical manifestation of a disease (pending final vetting)
• clinical phenotype (requires discussion)
• disease phenotype (requires discussion)
• vital sign (requires discussion)
• predisposition to disease of type X (organizational term)
• disease (ready for release)
• homeostasis (requires discussion)
• genetic predisposition to disease of type X (organizational term)
• acquired genetic disease(metadata incomplete)
• constitutional genetic disease (metadata incomplete)
• abnormal homeostasis (requires discussion)
• normal homeostasis (requires discussion)
• configuration (organizational term)
• pathological physical configuration (requires discussion)
• disorder (ready for release)
• epigenetic disorder (metadata incomplete)
• genetic disorder (metadata incomplete)
• acquired genetic disorder (metadata incomplete)
• constitutional genetic disorder (metadata incomplete)
• clinical history taking (metadata complete)
• laboratory test (metadata complete)
• physical examination (metadata complete)
• etiological process (metadata complete)
• bodily process (organizational term)
• pathological bodily process (metadata complete)
• disease course (ready for release)
• chronic disease course (metadata complete)
• progressive disease course (metadata complete)
• transient disease course (metadata complete)
• undefined primitive terms (organizational term)
• clinically abnormal (organizational term)
• physical basis (organizational term)
• realization (organizational term)
• diagnosis (ready for release)
• normal value (requires discussion)
• pathological formation (requires discussion)
• pathological anatomical structure (requires discussion)
• portion of pathological body substance (requires discussion)
• pathological transformation (requires discussion)
• pathological derivation (requires discussion)
• pathological invasion (requires discussion)
• physical examination finding (requires discussion)
• organism population (metadata complete)
• pain (requires discussion)
• syndrome (requires discussion)
• extended organism (metadata complete)
• patient symptom report (metadata complete)
• congenital malformation (metadata complete)
• treatment (metadata complete)
• convalescence (metadata complete)
• life course (metadata complete)
• prognosis (metadata complete)
• acute disease course (metadata complete)
• inflammation process (metadata complete)
• health care process (metadata complete)
• health care encounter (metadata complete)
• hospitalization (requires discussion)
• outpatient encounter (requires discussion)
• inpatient encounter (requires discussion)
• ED encounter (requires discussion)