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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 896 453

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 222 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 273 137

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 58

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 188 89

Repositories

Showing 10 of 310 repositories
  • OhdsiShinyModules Public

    An R package containing Shiny modules used by various OHDSI Shiny apps

    OHDSI/OhdsiShinyModules’s past year of commit activity
    R 8 11 54 4 Updated Nov 22, 2024
  • ShinyAppBuilder Public

    Create shiny apps using modules from OhdsiShinyModules or custom modules

    OHDSI/ShinyAppBuilder’s past year of commit activity
    R 6 2 5 2 Updated Nov 22, 2024
  • ReportGenerator Public

    A package that creates friendly report from results saved in an OHDSI standardized result database

    OHDSI/ReportGenerator’s past year of commit activity
    R 0 0 0 0 Updated Nov 22, 2024
  • WebAPI Public

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    OHDSI/WebAPI’s past year of commit activity
    Java 130 Apache-2.0 169 134 (1 issue needs help) 26 Updated Nov 22, 2024
  • Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    OHDSI/Vocabulary-v5.0’s past year of commit activity
    PLpgSQL 222 Unlicense 75 217 12 Updated Nov 22, 2024
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 14 Apache-2.0 14 1 2 Updated Nov 22, 2024
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 16 Apache-2.0 6 18 3 Updated Nov 22, 2024
  • Ulysses Public

    Ulysses is an R package that automates setup of an OHDSI study and provides functions to assist with its maintenance and organization.

    OHDSI/Ulysses’s past year of commit activity
    R 2 Apache-2.0 3 7 0 Updated Nov 21, 2024
  • DeepPatientLevelPrediction Public

    An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

    OHDSI/DeepPatientLevelPrediction’s past year of commit activity
    R 12 4 20 (2 issues need help) 2 Updated Nov 21, 2024
  • Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    OHDSI/Atlas’s past year of commit activity
    JavaScript 273 Apache-2.0 137 215 (1 issue needs help) 21 Updated Nov 21, 2024
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