Implementing graphGPS as a global attention wrapper around Hydra MPNNs #2050
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 3 * * 1' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python: ["3.9", "3.11"] | |
| steps: | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Checkout GCNN | |
| uses: actions/checkout@v2.2.0 | |
| - name: Install MPI | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libopenmpi-dev | |
| sudo apt-get clean | |
| - name: Cache pip | |
| uses: actions/cache@v2 | |
| id: cache | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('requirements.txt') }}-${{ hashFiles('requirements-dev.txt') }}-${{ hashFiles('requirements-torch.txt') }}-${{ hashFiles('requirements-pyg.txt') }}-${{ hashFiles('requirements-deepspeed.txt') }} | |
| - name: Install dependencies | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade -r requirements.txt -r requirements-dev.txt | |
| python -m pip install --upgrade -r requirements-torch.txt --index-url https://download.pytorch.org/whl/cpu --extra-index-url https://pypi.org/simple | |
| python -m pip install --upgrade -r requirements-pyg.txt --find-links https://data.pyg.org/whl/torch-2.0.1+cpu.html | |
| python -m pip install --upgrade -r requirements-deepspeed.txt | |
| - name: Format black | |
| run: | | |
| black . | |
| git diff --exit-code | |
| - name: Run pytest | |
| run: | | |
| # FIXME: install | |
| export PYTHONPATH=$PYTHONPATH:~/HydraGNN | |
| pip list | |
| python -m pytest -rfEP -W error -W ignore::DeprecationWarning -W ignore::UserWarning --tb=native | |
| mpirun -n 2 --oversubscribe python -m pytest -rfEP -W error -W ignore::DeprecationWarning -W ignore::UserWarning --tb=native --with-mpi |