Fgsea ci fix #1105
Workflow file for this run
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: [push, pull_request] | |
| # From https://github.com/r-lib/actions/blob/5e080d8d4241b4e7ed3834b113a6fa643d3f1351/examples/check-no-suggests.yaml#L8 | |
| name: R-CMD-check-hard | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"hard"' | |
| cache: false | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::testthat | |
| any::knitr | |
| any::rmarkdown | |
| any::kableExtra | |
| needs: check | |
| working-directory: OlinkAnalyze | |
| - name: Install Matrix from source | |
| run: | | |
| install.packages("Matrix", type="source", repos='http://cran.us.r-project.org') | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| working-directory: OlinkAnalyze | |