Merge pull request #488 from Olink-Proteomics/fgsea_ci_fix #3320
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| matrix_prep: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| # Required as the JSON input file needs to be read | |
| - uses: actions/checkout@v2 | |
| - id: set-matrix | |
| uses: JoshuaTheMiller/conditional-build-matrix@main | |
| with: | |
| inputFile: '.github/workflows/matrix_config_check.json' | |
| filter: '[?runOn==`${{ github.event_name }}` || runOn==`always`]' | |
| # addInclude: true | |
| R-CMD-check: | |
| needs: matrix_prep | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.matrix_prep.outputs.matrix)}} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| name: ${{ matrix.os }} (${{ matrix.r }}) | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: '2.18' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: OlinkAnalyze | |
| extra-packages: any::rcmdcheck, pillar | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| working-directory: OlinkAnalyze |