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Merge v3.5.3 into dev #2156

Merged
merged 224 commits into from
Apr 17, 2024
Merged

Merge v3.5.3 into dev #2156

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231afd9
Add 3 linearization regression tests:
andrew-platt Feb 15, 2024
7fee687
Add linearization of OC3Spar case
andrew-platt Feb 15, 2024
423ed81
Upgrade to setup-python@v5 and cache@v4 for GH actions
andrew-platt Feb 16, 2024
53b5f9f
Merge pull request #2041 from andrew-platt/b/GHactions_node16_deprecate
deslaughter Feb 19, 2024
fdf8642
Update fast_linearization_file.py to use less memory
deslaughter Feb 19, 2024
73e66a9
Use env var to set CTest parallel runs, reduce to 2
deslaughter Feb 19, 2024
577aded
Use more efficient method to compare linearization matrices in regres…
deslaughter Feb 19, 2024
7f49d46
Fix printing bug in Python Linear Regression test script
deslaughter Feb 19, 2024
7fdf580
GH actions: upgrade upload-artifact to v4
andrew-platt Feb 19, 2024
4414602
Fix bug in HD_Perturb_x where SS_Exctn%numStates was used instead of …
deslaughter Feb 19, 2024
07d608a
GH actions: upgrade checkout to v4 and setup-python to v5
deslaughter Feb 19, 2024
158459f
Update regression test pointer
deslaughter Feb 19, 2024
83f55eb
Merge pull request #2038 from andrew-platt/f/MoreLinearRegTests
andrew-platt Feb 19, 2024
5f1760f
Remove typo in warning, retains c/con option for output flags for bac…
RyanDavies19 Jan 26, 2024
4c664a0
Bathymetry grid bug fix
RyanDavies19 Jan 29, 2024
ad16990
Bathymetry grid slope normal vector bug fix
RyanDavies19 Jan 29, 2024
26f5a49
Change input string size for bathgrid and waterkin
RyanDavies19 Jan 30, 2024
d6483eb
Merge pull request #2049 from andrew-platt/f/Backport2013
andrew-platt Feb 19, 2024
f8e4813
Lin tests: increase out precision, error printing full filename
andrew-platt Feb 26, 2024
14f20d7
Add SubDyn Linearization test case
deslaughter Feb 26, 2024
3340726
Updated r-test pointer
deslaughter Feb 26, 2024
8e140b9
Lin: incorrect BD index in dUdy for AD motion
andrew-platt Feb 28, 2024
03ecb64
Merge pull request #2055 from andrew-platt/b/LinOutPrec-3.5.3
andrew-platt Feb 28, 2024
db8d795
Lin: sum BD blade root motion to hub moment m_ud term (consistent wit…
andrew-platt Feb 28, 2024
8269984
Update reg test 5MW_Land_BD_Linear_Aero
andrew-platt Feb 28, 2024
94a51d4
Merge pull request #2060 from andrew-platt/b/LinBD_AD
andrew-platt Feb 29, 2024
b6ce4b1
Fix bug in BD linearization resulting from reference rotation change
deslaughter Mar 1, 2024
a37aaaf
Update r-test pointer to revisions to 5MW_Land_BD_Linear and 5MW_Land…
deslaughter Mar 1, 2024
6dac6a0
Updated r-test pointer with new baseline for 5MW_Land_BD_Linear run a…
deslaughter Mar 1, 2024
e5a3bbd
Merge pull request #2063 from deslaughter/b/BeamDynRotStates
andrew-platt Mar 4, 2024
c6f9788
Handling of Paths for SrvD UserSubs Input Files
rdamiani Mar 8, 2024
bbcf464
Merge pull request #2079 from andrew-platt/f/SrvD_UserSubs_path
andrew-platt Mar 8, 2024
334c702
Revert " Resolve BeamDyn initial strain for rotated blade"
deslaughter Mar 11, 2024
f588ef5
Disable changing the reference frame
deslaughter Mar 11, 2024
9de4788
Implement new initial strain fix based on OpenTurbine documentation
deslaughter Mar 11, 2024
7a2c43e
SrvD: fix typo in registry from PR #2079
andrew-platt Mar 11, 2024
61b6b09
Merge remote-tracking branch 'upstream/rc-3.5.3' into b/BeamDynRotStates
deslaughter Mar 12, 2024
70f32cc
Update r-test pointer for changes to 5MW_Land_BD_Linear tests
deslaughter Mar 12, 2024
37b63c0
Restore previous fix to pitch actuator logic in SetParameters
deslaughter Mar 12, 2024
143b837
Merge pull request #2085 from deslaughter/b/BDInitialStrain
andrew-platt Mar 12, 2024
294b261
FASTlib: Turbine(:) array must use Fortran index 1 start
andrew-platt Mar 15, 2024
385c6bb
FASTlib: change ExternInitData%TurbineID to %TurbIDforName
andrew-platt Mar 15, 2024
31a5b03
FASTlib: change iTurb inputs to routines with c-bindings to index 0
andrew-platt Mar 15, 2024
7cd73e4
Set 5MW_Land_DLL_WTurb_cpp as a CPP_API test, not CPP_DRIVER
andrew-platt Mar 15, 2024
bcc91c0
Adjust if statements in FAST_OpFM_Step for iTurb being in range 1:Num…
deslaughter Mar 18, 2024
4c001eb
CPP testing: fix logic setting exec name in CMakeList.txt
andrew-platt Mar 18, 2024
e0cb005
TurbSim: increase filename to 1024 characters
andrew-platt Mar 18, 2024
3e029ef
Merge pull request #2097 from andrew-platt/b/FASTlib_TurbineIndex_1
andrew-platt Mar 20, 2024
51a2902
FIX: Update dockerfile base to get required `cmake` version
cortadocodes Mar 22, 2024
0184e60
CHO: Add `.idea` to `.gitignore`
cortadocodes Mar 22, 2024
2900399
ENH: Make dockerfile base configurable
cortadocodes Mar 22, 2024
8519687
ENH: Make dockerfile timezone configurable
cortadocodes Mar 22, 2024
79f5910
FIX: Fix timezone build arg in dockerfile
cortadocodes Mar 22, 2024
5dc82f4
ENH: Make openfast version configurable in dockerfile
cortadocodes Mar 22, 2024
f6bc0cc
ENH: Make cores available for building configurable in dockerfile
cortadocodes Mar 22, 2024
57a1fbd
ENH: Clone openfast with shallow submodules in dockerfile
cortadocodes Mar 22, 2024
561eb22
REF: Combine apt installation commands into one
cortadocodes Mar 22, 2024
0302ea8
ENH: Use `apt-get` instead of `apt` and remove cache
cortadocodes Mar 22, 2024
5e63e58
ENH: Make `openfast` command available in docker image
cortadocodes Mar 22, 2024
965bfa1
ENH: Make building testing tree optional
cortadocodes Mar 22, 2024
025f117
ENH: Avoid cloning submodules if not building test tree
cortadocodes Mar 22, 2024
bfde527
REF: Sort `apt-get install` lines
cortadocodes Mar 22, 2024
db0a7e7
REF: Factor out repository URL
cortadocodes Mar 25, 2024
5eb65ab
ENH: Remove commented out numpy installation
cortadocodes Mar 25, 2024
38af413
ENH: Set timezone to UTC by default
cortadocodes Mar 25, 2024
cc8a9c9
ENH: Set `BUILD_TESTING` to "OFF" by default
cortadocodes Mar 25, 2024
ce8fa16
REF: Rename `VERSION` build arg to `OPENFAST_VERSION`
cortadocodes Mar 25, 2024
9822a4c
ENH: Remove need to prefix version numbers with `v`
cortadocodes Mar 25, 2024
2b97678
ENH: Build from local context instead of cloning repository
cortadocodes Mar 25, 2024
c8814e0
ENH: Use a multi-stage build to reduce final image size
cortadocodes Mar 25, 2024
c146096
FIX: Ensure system dependencies are available in final image
cortadocodes Mar 25, 2024
dc326b3
ENH: Reduce docker image size by minimising included packages
cortadocodes Mar 25, 2024
19e4051
ENH: Remove extra packages from first build stage
cortadocodes Mar 25, 2024
fb67cc3
ENH: Allow injection of all `cmake` args
cortadocodes Mar 25, 2024
367aca0
REF: Move environment variables and build args to more optimal places
cortadocodes Mar 25, 2024
782041b
ENH: Set `CMAKE_BUILD_TYPE` to `RELEASE` by default
cortadocodes Mar 25, 2024
d994413
FIX: Add essential dependencies back to build stage
cortadocodes Mar 25, 2024
d1c8982
ENH: Add `nano` back to production image
cortadocodes Mar 25, 2024
60a689b
ENH: Add comments explaining build stages
cortadocodes Mar 25, 2024
5ae67cc
CHO: Add dockerfiles to `.dockerignore`
cortadocodes Mar 25, 2024
e07542e
FIX: Add `git` back to build stage
cortadocodes Mar 25, 2024
96a33da
DOC: Add readme explaining dockerfile
cortadocodes Mar 26, 2024
b35146f
OPS: Add `build-docker-image` workflow
cortadocodes Mar 26, 2024
392492b
CHO: Update copyright year in dockerfile
cortadocodes Mar 26, 2024
27a5c66
ENH: Get dockerfile if running workflow on an older version
cortadocodes Mar 26, 2024
ffae93a
MRG: Merge pull request #1 from octue/update-dockerfiles
cortadocodes Mar 26, 2024
e43e760
OPS: Use correct docker action versions
cortadocodes Mar 26, 2024
e63477b
MRG: Merge branch 'update-dockerfiles'
cortadocodes Mar 26, 2024
a51922a
OPS: Use environment context instead of environment variables
cortadocodes Mar 26, 2024
6a47596
MRG: Merge branch 'update-dockerfiles'
cortadocodes Mar 26, 2024
24bd1ff
ENH: Use `--no-install-recommends` in dockerfile
cortadocodes Mar 26, 2024
8cbac60
OPS: Factor out and fix docker repository in docker workflow
cortadocodes Mar 26, 2024
ff51c68
MRG: Merge branch 'update-dockerfiles'
cortadocodes Mar 26, 2024
e38e88b
VSbuild: always build Registry as release x64
andrew-platt Mar 26, 2024
c53164d
Add initialization of MHK, WtrDpth, MSL2SWL in IfW_InitInp for AWAE m…
deslaughter Mar 26, 2024
9f5cb77
Use of potentially unallocated array in AeroDyn_AllBldNdOuts.
deslaughter Mar 26, 2024
75f35b6
VSbuild: increase stack size for FAST.Farm
andrew-platt Mar 26, 2024
0a06e32
Merge pull request #2116 from andrew-platt/b/Reg_x64_VSbuild
andrew-platt Mar 26, 2024
106ed6b
Merge pull request #2118 from deslaughter/b/FAST.FarmMemInit
andrew-platt Mar 26, 2024
70c0870
CMake: openmp optional for FF and CPP if not explicitly requested (#2…
andrew-platt Mar 26, 2024
db7e686
Update docs for release 3.5.3
andrew-platt Mar 26, 2024
8de46aa
OPS: Add comment explaining Dockerfile download step
cortadocodes Mar 27, 2024
c6aee2b
OPS: Rename environment variable for consistency
cortadocodes Mar 27, 2024
9a12135
CHO: Move `.idea` into correct section of `.gitignore`
cortadocodes Mar 27, 2024
520931c
ENH: Add 2016 to start of copyright notice in Dockerfile
cortadocodes Mar 27, 2024
aab4a6d
OPS: Build docker image for `linux/aarch64` too
cortadocodes Mar 27, 2024
d59fccb
MRG: Merge branch 'update-dockerfiles'
cortadocodes Mar 27, 2024
14e77db
OPS: Add description to docker workflow
cortadocodes Mar 27, 2024
3e06eab
OPS: Add automatic docker build on merge into `main` from RC branches
cortadocodes Mar 27, 2024
0e8a61a
OPS: Add `test-build-docker-image` workflow
cortadocodes Mar 27, 2024
7f4b551
CMake: openmp optional for FF and CPP if not explicitly requested (co…
andrew-platt Mar 27, 2024
4a04caa
ENH: Use long-term-support ubuntu base by default
cortadocodes Mar 28, 2024
a6d4197
DOC: Update documentation
cortadocodes Mar 28, 2024
6b2e890
DOC: Update dockerfile readme
cortadocodes Mar 28, 2024
26c48da
DOC: Fix link in docs
cortadocodes Mar 28, 2024
7bd86cc
MRG: Merge branch 'update-dockerfiles'
cortadocodes Mar 28, 2024
11c8cbf
OPS: Fix version extraction
cortadocodes Mar 28, 2024
1c3115f
OPS: Use extracted tag in test workflow
cortadocodes Mar 28, 2024
5e80427
OPS: Fix tag extraction in automated docker workflow
cortadocodes Mar 28, 2024
81357c3
VSbuild: set VS version to VS 2017
andrew-platt Mar 28, 2024
e45a518
Add empty requirements.txt in repo root to work around setup-python i…
deslaughter Mar 28, 2024
b55f2e9
Attempt using requirements.txt to install testing dependencies
deslaughter Mar 28, 2024
cbee1cc
Add vtk package to requirements.txt
deslaughter Mar 28, 2024
b6849ce
Docs: update python modules for regression testing
andrew-platt Mar 28, 2024
afcf7aa
Merge pull request #2128 from andrew-platt/f/VSbuild_2017
andrew-platt Mar 28, 2024
6184f95
FIX: Update dockerfile base to get required `cmake` version
cortadocodes Mar 22, 2024
e1bcb8c
CHO: Add `.idea` to `.gitignore`
cortadocodes Mar 22, 2024
cd05a11
ENH: Make dockerfile base configurable
cortadocodes Mar 22, 2024
de58129
ENH: Make dockerfile timezone configurable
cortadocodes Mar 22, 2024
5f9e3ae
FIX: Fix timezone build arg in dockerfile
cortadocodes Mar 22, 2024
5fc6f79
ENH: Make openfast version configurable in dockerfile
cortadocodes Mar 22, 2024
5a97da4
ENH: Make cores available for building configurable in dockerfile
cortadocodes Mar 22, 2024
5e2ca6b
ENH: Clone openfast with shallow submodules in dockerfile
cortadocodes Mar 22, 2024
c8b817f
REF: Combine apt installation commands into one
cortadocodes Mar 22, 2024
df21818
ENH: Use `apt-get` instead of `apt` and remove cache
cortadocodes Mar 22, 2024
1fd0051
ENH: Make `openfast` command available in docker image
cortadocodes Mar 22, 2024
02d9dea
ENH: Make building testing tree optional
cortadocodes Mar 22, 2024
74753f6
ENH: Avoid cloning submodules if not building test tree
cortadocodes Mar 22, 2024
dadbf1e
REF: Sort `apt-get install` lines
cortadocodes Mar 22, 2024
14d08b6
REF: Factor out repository URL
cortadocodes Mar 25, 2024
971053c
ENH: Remove commented out numpy installation
cortadocodes Mar 25, 2024
baa9969
ENH: Set timezone to UTC by default
cortadocodes Mar 25, 2024
47bf090
ENH: Set `BUILD_TESTING` to "OFF" by default
cortadocodes Mar 25, 2024
ee1c2ae
REF: Rename `VERSION` build arg to `OPENFAST_VERSION`
cortadocodes Mar 25, 2024
59cca57
ENH: Remove need to prefix version numbers with `v`
cortadocodes Mar 25, 2024
81a19d1
ENH: Build from local context instead of cloning repository
cortadocodes Mar 25, 2024
ef8843a
ENH: Use a multi-stage build to reduce final image size
cortadocodes Mar 25, 2024
d51173b
FIX: Ensure system dependencies are available in final image
cortadocodes Mar 25, 2024
de2bc70
ENH: Reduce docker image size by minimising included packages
cortadocodes Mar 25, 2024
ea408d0
ENH: Remove extra packages from first build stage
cortadocodes Mar 25, 2024
e1d51be
ENH: Allow injection of all `cmake` args
cortadocodes Mar 25, 2024
9144086
REF: Move environment variables and build args to more optimal places
cortadocodes Mar 25, 2024
597800d
ENH: Set `CMAKE_BUILD_TYPE` to `RELEASE` by default
cortadocodes Mar 25, 2024
ec7ec82
FIX: Add essential dependencies back to build stage
cortadocodes Mar 25, 2024
161b51b
ENH: Add `nano` back to production image
cortadocodes Mar 25, 2024
180d020
ENH: Add comments explaining build stages
cortadocodes Mar 25, 2024
00067fe
CHO: Add dockerfiles to `.dockerignore`
cortadocodes Mar 25, 2024
8af81e7
FIX: Add `git` back to build stage
cortadocodes Mar 25, 2024
78b5abb
DOC: Add readme explaining dockerfile
cortadocodes Mar 26, 2024
a02ec3d
OPS: Add `build-docker-image` workflow
cortadocodes Mar 26, 2024
6c68da0
CHO: Update copyright year in dockerfile
cortadocodes Mar 26, 2024
1880475
ENH: Get dockerfile if running workflow on an older version
cortadocodes Mar 26, 2024
ebbc2d9
OPS: Use correct docker action versions
cortadocodes Mar 26, 2024
da484ff
OPS: Use environment context instead of environment variables
cortadocodes Mar 26, 2024
c3f105c
ENH: Use `--no-install-recommends` in dockerfile
cortadocodes Mar 26, 2024
dbdcd6b
OPS: Factor out and fix docker repository in docker workflow
cortadocodes Mar 26, 2024
0eae5b5
OPS: Add comment explaining Dockerfile download step
cortadocodes Mar 27, 2024
5a38b4b
OPS: Rename environment variable for consistency
cortadocodes Mar 27, 2024
1a270fa
CHO: Move `.idea` into correct section of `.gitignore`
cortadocodes Mar 27, 2024
061bc25
ENH: Add 2016 to start of copyright notice in Dockerfile
cortadocodes Mar 27, 2024
dc671e9
OPS: Build docker image for `linux/aarch64` too
cortadocodes Mar 27, 2024
b6f9d8e
OPS: Add description to docker workflow
cortadocodes Mar 27, 2024
0c858fa
OPS: Add automatic docker build on merge into `main` from RC branches
cortadocodes Mar 27, 2024
86f3f12
OPS: Add `test-build-docker-image` workflow
cortadocodes Mar 27, 2024
68605cb
ENH: Use long-term-support ubuntu base by default
cortadocodes Mar 28, 2024
2195efa
DOC: Update documentation
cortadocodes Mar 28, 2024
631a44d
DOC: Update dockerfile readme
cortadocodes Mar 28, 2024
11ae1b8
DOC: Fix link in docs
cortadocodes Mar 28, 2024
bdd085b
OPS: Fix version extraction
cortadocodes Mar 28, 2024
c2e744f
OPS: Use extracted tag in test workflow
cortadocodes Mar 28, 2024
58155a4
OPS: Fix tag extraction in automated docker workflow
cortadocodes Mar 28, 2024
ea169e0
Merge pull request #2129 from deslaughter/b/setup-python_cache_failure
andrew-platt Mar 28, 2024
bc5617a
Merge pull request #2130 from andrew-platt/f/Docs_testing
andrew-platt Mar 28, 2024
531dbe9
Update changelog with recent rc-3.5.3 additions
andrew-platt Mar 28, 2024
5a0cf8b
SrvD: Fix seg fault if blade StC used while writing summary file
andrew-platt Apr 1, 2024
0b594dd
Update changelog with this PR.
andrew-platt Apr 1, 2024
c5ff09d
Merge pull request #2134 from andrew-platt/b/SrvD_SumFileSegFault
andrew-platt Apr 1, 2024
4f6be20
Changelog: fix entry in 3.5.3 changelog
andrew-platt Apr 1, 2024
8d16cea
Docs: fix rendering of docker commands
andrew-platt Apr 1, 2024
0aca3d0
ENH: Build FAST.Farm in docker image by default
cortadocodes Apr 2, 2024
bd090f0
DEP: Replace `libblas-dev` and `liblapack-dev` with `libopenblas-dev`
cortadocodes Apr 2, 2024
96d0e5e
DOC: Update readme with new cmake default arguments
cortadocodes Apr 2, 2024
c185a0a
REF: Move `Dockerfile` and readme up one directory
cortadocodes Apr 2, 2024
d0ac94b
ENH: Use `nrel` docker and github repository
cortadocodes Apr 2, 2024
4337738
FIX: Add missing packages to final image
cortadocodes Apr 2, 2024
90ad82a
MRG: Merge remote-tracking branch 'upstream/rc-3.5.3' into update-doc…
cortadocodes Apr 2, 2024
e18dc41
Remove linking of implicit Fortran libraries.
jrood-nrel Apr 1, 2024
fcb2be9
FIX: Remove old dockerfile
cortadocodes Apr 2, 2024
8ea0b9d
Docs: update changelog for PR #2138
andrew-platt Apr 2, 2024
7fb40b0
REF: Combine `make` commands in dockerfile
cortadocodes Apr 2, 2024
db131b1
ENH: Turn off double precision docker builds by default
cortadocodes Apr 2, 2024
85ee2dc
Merge pull request #2138 from andrew-platt/b/cmake_ImplicitLinking
andrew-platt Apr 2, 2024
b100421
FIX: Revert to single `make` command in dockerfile
cortadocodes Apr 4, 2024
015bdd1
adding GH container registry to the workflows
mayankchetan Apr 4, 2024
2bc30e2
Changing to auto generated token
mayankchetan Apr 4, 2024
f08795d
adding permissions for GHCR and Commenting out dockerhub login until …
mayankchetan Apr 4, 2024
f03df27
Merge pull request #2139 from octue/final-dockerfile-updates
andrew-platt Apr 4, 2024
a56bcc8
correcting GH registry link
mayankchetan Apr 4, 2024
4ac6c8a
Merge pull request #2141 from mayankchetan/ghcr-actions
andrew-platt Apr 4, 2024
612915b
Adding Hyperlink to appendixD.rst
reilandsberger Apr 5, 2024
43866be
Removing the unnecessary undercase
reilandsberger Apr 5, 2024
d4214da
Merge pull request #2144 from reilandsberger/rlandsbe-readthedocs-pat…
andrew-platt Apr 5, 2024
86be053
Docs: docker from GitHub container repo
andrew-platt Apr 5, 2024
368c6b2
docs: update changelog
andrew-platt Apr 5, 2024
8242f76
Docs: set to `latest` for all example docker commands
andrew-platt Apr 5, 2024
d5ce801
Merge pull request #2145 from andrew-platt/docs/update_for_3.5.3_release
andrew-platt Apr 11, 2024
2166f9f
GH actions: build docker on release instead of merge
andrew-platt Apr 11, 2024
26d570f
Merge pull request #2154 from andrew-platt/f/docker_on_release
andrew-platt Apr 11, 2024
eabd6b5
Update r-test pointer to v3.5.3 tag
andrew-platt Apr 11, 2024
6a7a543
Merge pull request #2121 from OpenFAST/rc-3.5.3
andrew-platt Apr 11, 2024
2303ded
Merge remote-tracking branch 'OpenFAST/main' into m/3.5.3_to_dev
andrew-platt Apr 12, 2024
0e68137
Update iTurb indexing in FAST_Library.f90 FSI CFD funcs (See Issue #2…
deslaughter Apr 16, 2024
ce99824
FAST_Library: linting and a few additional comments
andrew-platt Apr 16, 2024
31e9c74
Update r-test
andrew-platt Apr 16, 2024
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26 changes: 26 additions & 0 deletions .dockerignore
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Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
# System, cache and editor files
**/__pycache__
**/.DS_Store

.editorconfig
.idea
.git
.github
.gitignore
.pytest_cache
.pre-commit-config.yaml
.readthedocs.yml
.coverage
Procfile
README.md

# Never bake in environment variables
.env
.env*
google_credentials.json
# See: https://github.com/google-github-actions/auth/issues/123
gha-creds-*.json
gcp-creds-*.json

.devcontainer/.zsh_history
share/docker
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