Tps no step limiter #189
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Tps no step limiter #189
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added 2 commits
July 3, 2023 13:42
Treatment plan source file was missing from the branch. Added. small modifications. Still trying to figure out the error in spot positions Fixed bug with TPS rotation and created tests Removed old version of the helpers. Now the function that reads the treatment plan txt file returns also the gantry angle Created tests for: optics in air, absolute dose in water and gantry rotation. Working version of TPSource Removed full MA polinomia from the beamline model added test for weights and comparison pbs-tps exposed G4UserLimits and StepLimiter Corrected bugs in TPSource and created working tests for optics, absolute dose, ranges and weights Improved test metrics and TPS readability test optics in vbl Refactored TPS init and renamed beamline properties changed TPS initialization minor changes, mainly estetics' turn off visualization reduced the size of the detectors Further reduced the detector's side Included energy spread in the TPS model and examples Corrected inconsistency in test for absolute dose. Added function to test dose grid shape and spacing to helpers_test accounted for correction in dose grid (PR#137) accounted for PR#137 corrected scale_dose function for case image size 1,1,x multiprocessing: do we need a timeout in p.join()? spot weighted on the beamset number of particles, not on the beam ones. created separate neme dictionary for particles to use in user_limit Changed queue initialization for multiprocessing added check to avoid error when beam spot has almost zero weight removed step limiter from branch modified threshold
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…pot is a fraction of the requested particles to simulate, we round this number to have an integer. Therefore the final number of simulated particles may be different from the required one, expecially for low number of particles
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The tests are ok: I merge |
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Same than https://github.com/OpenGATE/opengate/pull/148/files after rebasing
created tests for tps source
Treatment plan source file was missing from the branch. Added. small modifications. Still trying to figure out the error in spot positions Fixed bug with TPS rotation and created tests
Removed old version of the helpers. Now the function that reads the treatment plan txt file returns also the gantry angle Created tests for: optics in air, absolute dose in water and gantry rotation. Working version of TPSource
Removed full MA polinomia from the beamline model
added test for weights and comparison pbs-tps
exposed G4UserLimits and StepLimiter
Corrected bugs in TPSource and created working tests for optics, absolute dose, ranges and weights Improved test metrics and TPS readability
test optics in vbl
Refactored TPS init and renamed beamline properties changed TPS initialization
minor changes, mainly estetics'
turn off visualization
reduced the size of the detectors
Further reduced the detector's side
Included energy spread in the TPS model and examples Corrected inconsistency in test for absolute dose. Added function to test dose grid shape and spacing to helpers_test accounted for correction in dose grid (PR#137)
accounted for PR#137
corrected scale_dose function for case image size 1,1,x multiprocessing: do we need a timeout in p.join()? spot weighted on the beamset number of particles, not on the beam ones. created separate neme dictionary for particles to use in user_limit Changed queue initialization for multiprocessing
added check to avoid error when beam spot has almost zero weight removed step limiter from branch
modified threshold