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choose binder instance able to run our notebooks
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timosachsenberg committed Nov 2, 2023
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -34,4 +34,4 @@ Are created by CI and stored in master+ipynb to not clutter the master branch.

Binder integration
=============
Binder uses the Jupyter Notebooks in master+ipynb. The conda environment is described in environment.yml, the post-build event installs the nightly pyopenms wheel. Currently, only environment.yml is used by binder. Note: You can test a branch "jpfeuffer-patch-6" using https://mybinder.org/v2/gh/OpenMS/pyopenms-docs/jpfeuffer-patch-6
Binder uses the Jupyter Notebooks in master+ipynb. The conda environment is described in environment.yml, the post-build event installs the nightly pyopenms wheel. Currently, only environment.yml is used by binder. Note: You can test a branch "jpfeuffer-patch-6" using https://notebooks.gesis.org/binder/v2/gh/OpenMS/pyopenms-docs/jpfeuffer-patch-6
2 changes: 1 addition & 1 deletion docs/source/_templates/navbar-run-binder.html
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<ul class="navbar-icon-links navbar-nav" aria-label="Custom Icon Links">
<li class="nav-item">
<a href="https://mybinder.org/v2/gh/{{ github_user }}/{{ github_repo }}/{{ github_version }}+ipynb?urlpath=lab/tree/{{ doc_path }}{{ pagename }}.ipynb" class="nav-link" rel="noopener" target="_blank" data-bs-toggle="tooltip" data-bs-original-title="Launch on Binder" data-bs-placement="bottom"><span><i class="fa fa-rocket fa-beat fa-lg"></i></span>
<a href="https://notebooks.gesis.org/binder/v2/gh/{{ github_user }}/{{ github_repo }}/{{ github_version }}+ipynb?urlpath=lab/tree/{{ doc_path }}{{ pagename }}.ipynb" class="nav-link" rel="noopener" target="_blank" data-bs-toggle="tooltip" data-bs-original-title="Launch on Binder" data-bs-placement="bottom"><span><i class="fa fa-rocket fa-beat fa-lg"></i></span>
<label class="sr-only">Launch on Binder</label></a>
</li>
</ul>
2 changes: 1 addition & 1 deletion docs/source/user_guide/interactive_plots.rst
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With this you can also easily create whole dashboards like the one
hosted `here <https://mybinder.org/v2/gh/OpenMS/pyopenms-docs/master+ipynb?urlpath=msbokehapps>`_ on a Binder instance.
hosted `here <https://notebooks.gesis.org/binder/v2/gh/OpenMS/pyopenms-docs/master+ipynb?urlpath=msbokehapps>`_ on a Binder instance.
If you are reading/executing this on Binder already, execute the next cell to get a link to your current instance.

.. code-block:: python
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