docker: new build for new XClim and to get Dask dashboard and Panel server app to work

Jenkinsfile

@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220401"
+            image "pavics/workflow-tests:220427"
             label 'linux && docker'
         }
     }

binder/Dockerfile

@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220401
+FROM pavics/workflow-tests:220427
 
 USER root
 

docker/Dockerfile

@@ -17,7 +17,7 @@ RUN apt-get update && \
 # Change /opt/conda folder permissions for jupyter-conda extension.
 RUN groupadd --gid 1000 jenkins \
     && useradd --uid 1000 --gid jenkins --create-home jenkins && \
-    chmod -R a+rwx /opt/conda
+    chmod -R a+rwX /opt/conda
 
 COPY environment.yml /environment.yml
 
@@ -70,7 +70,9 @@ RUN python -m ipykernel install --name birdy
 # https://github.com/plotly/jupyter-dash/issues/49
 RUN jupyter lab build
 
-RUN jupyter serverextension enable voila --sys-prefix
+RUN jupyter serverextension enable voila --sys-prefix \
+    && jupyter serverextension enable panel.io.jupyter_server_extension --sys-prefix \
+    && jupyter serverextension list
 #    && jupyter labextension install jupyterlab-clipboard
 
 # This should be "master" but commit
@@ -94,7 +96,11 @@ RUN wget https://raw.githubusercontent.com/jupyter/docker-stacks/$DOCKER_STACKS_
     chmod a+rx /usr/local/bin/start.sh /usr/local/bin/start-singleuser.sh /usr/local/bin/start-notebook.sh /usr/local/bin/fix-permissions && \
     chmod a+r /etc/jupyter/jupyter_notebook_config.py && \
     mkdir /notebook_dir && chown jenkins /notebook_dir && \
-    chmod a+rwX -R /opt/conda/envs/birdy/fonts
+    chmod a+rwX -R /opt/conda/envs/birdy/fonts && \
+    chmod a+rwX -R /opt/conda/pkgs/cache
+
+# For jupyter-panel-proxy launcher.
+ENV BOKEH_ALLOW_WS_ORIGIN "*"
 
 # problem running start-notebook.sh when being root
 # the jupyter/base-notebook image also do not default to root user so we do the same here

docker/environment.yml

@@ -5,6 +5,7 @@ channels:
   - cdat
   - bokeh
   - plotly  # for jupyter-dash
+  - pyviz/label/dev  # for jupyter-panel-proxy, panel
   - defaults
 
 dependencies:
@@ -57,7 +58,7 @@ dependencies:
   - jupyter_bokeh
   - pscript
   - h5netcdf
-  - panel
+  - panel >= 0.13.1a2
   # https://github.com/holoviz/panel
   - pyviz_comms  # (was labextension pyviz/jupyterlab_pyviz in jupyterlab v2)
   - holoviews
@@ -170,6 +171,12 @@ dependencies:
   # xeus-python: back-end kernel implementing the Jupyter Debug Protocol
   - xeus-python
   - jupyter-dash
+  # https:://github.com/jupyterhub/jupyter-server-proxy
+  - jupyter-server-proxy
+  # https://github.com/dask/dask-labextension
+  - dask-labextension
+  # https://github.com/holoviz/jupyter-panel-proxy
+  - jupyter-panel-proxy >= 0.2.0a2
   # Force newer nodejs for 'jupyter lab build' issue
   # https://github.com/jupyterlab/jupyterlab/issues/11726#issuecomment-998901247
   # TODO: remove nodejs once all extensions move to prebuilt extensions, see comment

launchcontainer

@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220401"
+    DOCKER_IMAGE="pavics/workflow-tests:220427"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

launchnotebook

@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220401"
+    DOCKER_IMAGE="pavics/workflow-tests:220427"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then