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Merge branch 'main' into dev #1100

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Merge branch 'main' into dev

Merge branch 'main' into dev #1100

Triggered via push July 19, 2024 15:19
@nebfieldnebfield
pushed 90e1037
dev
Status Failure
Total duration 10m 15s
Artifacts 5

ci.yml

on: push
preload_docker  /  docker
2m 1s
preload_docker / docker
preload_singularity  /  singularity
54s
preload_singularity / singularity
preload_ancestry  /  preload_reference
6s
preload_ancestry / preload_reference
Matrix: pytest_workflow_docker
Matrix: standard_test_docker / docker
Matrix: standard_test_docker / singularity
Matrix: pytest_workflow_singularity
Matrix: standard_test_singularity / docker
Matrix: standard_test_singularity / singularity
ancestry_docker  /  docker
6m 42s
ancestry_docker / docker
ancestry_docker  /  singularity
0s
ancestry_docker / singularity
ancestry_vcf_docker  /  docker
7m 52s
ancestry_vcf_docker / docker
ancestry_vcf_docker  /  singularity
0s
ancestry_vcf_docker / singularity
ancestry_singularity  /  docker
0s
ancestry_singularity / docker
ancestry_singularity  /  singularity
7m 2s
ancestry_singularity / singularity
ancestry_vcf_singularity  /  docker
0s
ancestry_vcf_singularity / docker
ancestry_vcf_singularity  /  singularity
6m 44s
ancestry_vcf_singularity / singularity
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27 errors
standard_test_singularity / singularity (test, singularity, 23.10.0)
Process completed with exit code 1.
standard_test_singularity / singularity (test, singularity, latest)
Process completed with exit code 1.
pytest_workflow_singularity (test perfect apply score) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (test apply score subworkflow) / singularity
Process completed with exit code 1.
pytest_workflow_singularity (plink2 testsmallscore) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (plink2 testsmallscore) / singularity
The operation was canceled.
pytest_workflow_singularity (test combine scorefiles module) / singularity
FailFast: cancelling since parallel instance has failed
pytest_workflow_singularity (test combine scorefiles module) / singularity
The operation was canceled.
standard_test_docker / docker (test, docker, 23.10.0)
Process completed with exit code 1.
standard_test_docker / docker (test, docker, latest)
Process completed with exit code 1.
pytest_workflow_docker (test apply score subworkflow) / docker
Process completed with exit code 1.
pytest_workflow_docker (test perfect apply score) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test perfect apply score) / docker
Process completed with exit code 1.
pytest_workflow_docker (test input check subworkflow) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test input check subworkflow with PGS catalog API and whitespace) / docker
The operation was canceled.
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (pgscatalog test --efo_trait --pgp_id and --pgs_id) / docker
The operation was canceled.
pytest_workflow_docker (test combine scorefiles module) / docker
FailFast: cancelling since parallel instance has failed
pytest_workflow_docker (test combine scorefiles module) / docker
The operation was canceled.
ancestry_vcf_singularity / singularity
Process completed with exit code 1.
ancestry_singularity / singularity
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
ancestry_singularity / singularity
Process completed with exit code 1.
ancestry_docker / docker
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
ancestry_docker / docker
Process completed with exit code 1.
ancestry_vcf_docker / docker
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
ancestry_vcf_docker / docker
Process completed with exit code 1.

Artifacts

Produced during runtime
Name Size
logs-docker-test apply score subworkflow
6.1 MB
logs-docker-test perfect apply score
1.13 MB
logs-singularity-ancestry
11.9 KB
logs-singularity-test apply score subworkflow
6.1 MB
logs-singularity-test perfect apply score
1.13 MB