split standard CI test

.github/workflows/ci.yml

@@ -15,44 +15,12 @@ on:
 jobs:
   preload_containers:
     uses: ./.github/workflows/preload-containers.yml
-
-  test:
-    needs: preload_containers
-    name: Run standard workflow test
-    runs-on: ubuntu-latest
-    env:
-      NXF_VER: ${{ matrix.nxf_ver }}
-    strategy:
-      fail-fast: false
-      matrix:
-        test_profile: ["test"]
-        profile: ["docker"]
-        nxf_ver: ['22.10.0', ''] # minimum supported version, latest version
-
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@v3
-
-      - uses: nf-core/setup-nextflow@v1
-        with:
-          version: ${{ matrix.nxf_ver }}
 
-      - name: Restore docker cache
-        id: restore-docker
-        uses: actions/cache@v3
-        if: matrix.profile == 'docker'
-        with:
-          path: ${{ runner.temp }}/docker
-          key: ${{ needs.preload_docker.outputs.docker-cache-key }}
-
-      - name: Load docker images from cache
-        if: steps.restore-docker.outputs.cache-hit == 'true'
-        run: |
-          find $HOME -name '*.tar'
-          find ${{ runner.temp }}/docker/ -name '*.tar' -exec sh -c 'docker load < {}' \;
-
-      - name: Run pipeline with test data
-        continue-on-error: false
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_profile}},${{ matrix.profile }}
+  standard_test:
+    needs: preload_containers
+    uses: ./.github/workflows/standard-test.yml
+    with:
+      docker-cache-key: ${{ jobs.preload_containers.output.docker-cache-key }}
+      singularity-cache-key: ${{ jobs.preload_containers.output.singularity-cache-key }}
+
 

.github/workflows/standard-test.yml

@@ -0,0 +1,49 @@
+name: Run standard test with singularity and docker profiles
+
+on:
+  workflow_call:
+    inputs:
+      docker-cache-key:
+        required: true
+        type: string
+      singularity-cache-key:
+        required: true
+        type: string
+
+jobs:
+  standard_test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        test_profile: ["test"]
+        profile: ["docker"]
+        nxf_ver: ['22.10.0', 'latest']
+
+    steps:
+      - name: Check out pipeline code
+        uses: actions/checkout@v3
+
+      - uses: nf-core/setup-nextflow@v1
+        with:
+          version: ${{ matrix.nxf_ver }}
+
+      - name: Restore docker images
+        if: matrix.profile == 'docker'
+        id: restore-docker
+        uses: actions/cache/restore@v3
+        with:
+          path: ${{ runner.temp }}/docker
+          key: ${{ inputs.docker-cache-key }}
+
+      - name: Load docker images from cache
+        if: steps.restore-docker.outputs.cache-hit == 'true'
+        run: |
+          find $HOME -name '*.tar'
+          find ${{ runner.temp }}/docker/ -name '*.tar' -exec sh -c 'docker load < {}' \;
+
+      - name: Run pipeline with test data
+        run: |
+          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_profile}},${{ matrix.profile }}
+    
+