Check for _ in sampleset names

PGScatalog · Apr 9, 2024 · 954330a · 954330a
1 parent 8bdf287
commit 954330a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/SamplesheetParser.groovy b/lib/SamplesheetParser.groovy
@@ -174,7 +174,7 @@ class SamplesheetParser {
 
     private def checkReservedName(samplesheet) {
         def samplesets = samplesheet.collect { row -> row.sampleset }
-        def n_bad_name = samplesets.count { it == "reference" }
+        def n_bad_name = samplesets.count { it == "reference" | it.contains("_") }
 
         if (n_bad_name != 0) {
             Nextflow.error("Reserved sampleset name detected. Please don't call your sampleset 'reference'")