fix environment variable

PGScatalog · Jul 19, 2023 · c76e5bc · c76e5bc
1 parent f13ba3f
commit c76e5bc
Showing 1 changed file with 4 additions and 8 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -12,19 +12,15 @@ on:
   release:
     types: [published]
 
-env:
-  NXF_SINGULARITY_CACHEDIR: "${{ github.workspace }}/singularity"
-  SINGULARITY_VERSION: "3.8.3"
-
 jobs:
   preload_docker:
     uses: ./.github/workflows/preload-docker.yml
 
   preload_singularity:
     uses: ./.github/workflows/preload-singularity.yml
     with:
-      singularity_version: ${{ env.SINGULARITY_VERSION }}
-      nxf_singularity_cachedir: ${{ env.NXF_SINGULARITY_CACHEDIR }}
+      singularity_version: 3.8.3
+      nxf_singularity_cachedir: ${{ github.workspace }}/singularity
 
   standard_test_docker:        
     needs: preload_docker
@@ -39,6 +35,6 @@ jobs:
     with:
       cache-key: ${{ needs.preload_singularity.outputs.cache-key }}
       singularity: true
-      singularity_version: ${{ env.SINGULARITY_VERSION }}
-      nxf_singularity_cachedir: ${{ env.NXF_SINGULARITY_CACHEDIR }}
+      singularity_version: 3.8.3
+      nxf_singularity_cachedir: ${{ github.workspace }}/singularity