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v2.0.0-beta #318

Merged
merged 15 commits into from
Jun 19, 2024
Merged

v2.0.0-beta #318

merged 15 commits into from
Jun 19, 2024

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nebfield
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@nebfield nebfield commented Jun 18, 2024 •
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Changelog

Graduating to beta with the release of our preprint 🎉

Improvements

Bug fixes

nebfield and others added 10 commits June 5, 2024 16:34
@nebfield
use dev version of pygscatalog
6674902 
use dev version of pgscatalog-utils
@nebfield
fix versions
0019081
@nebfield
update images
d84d45d
@nebfield @smlmbrt
Add match error explanation to docs (#311)
f2f9565 
* add match explanation

* Update match.rst

Some edits

---------

Co-authored-by: Sam Lambert <sam.a.lambert@gmail.com>
@nebfield
Explicitly declare plugins in nextflow.config (#315)
b5cf669 
* declare plugins explicitly

* add provenance to pipeline_info output

* update citation string

* remove deprecated parameter

* nf-schema migration updates

* fix validation parameter case

* update help message to use nf-schema

* update offline instructions with plugin information

* fix typo
@nebfield
bump fraposa_pgsc version
cb3d6c5
@nebfield
disable nf-schema validateparameters() for now
1f5656d
@nebfield
update conda environments
41b6f23
@nebfield
update pyyaml environment
c11f8f6
@nebfield
bump pgscatalog-utils to v1.1.1
ee25d58
@nebfield nebfield linked an issue Jun 18, 2024 that may be closed by this pull request
_SUM and _AVG are being appended to outputs of ancestry analysis #301
Closed
@nebfield nebfield marked this pull request as ready for review June 19, 2024 15:32
@nebfield nebfield requested a review from smlmbrt June 19, 2024 15:32
smlmbrt
smlmbrt approved these changes Jun 19, 2024
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Looks good to me!

@nebfield nebfield merged commit eaa553a into main Jun 19, 2024
234 checks passed
@nebfield nebfield deleted the dev branch June 19, 2024 15:52
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@smlmbrt smlmbrt smlmbrt approved these changes

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nf-validation cannot find the manifest path _SUM and _AVG are being appended to outputs of ancestry analysis
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@nebfield @smlmbrt