fix handling of dominant / recessive #98
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name: build development images | |
on: | |
push: | |
branches: | |
- dev | |
env: | |
REGISTRY_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
REGISTRY_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
DOCKER_REGISTRY_LOGIN: "dockerhub.ebi.ac.uk" | |
SINGULARITY_REGISTRY_LOGIN: "oras://dockerhub.ebi.ac.uk" | |
DOCKER_REGISTRY: "dockerhub.ebi.ac.uk/gdp-public/pgscatalog_utils" | |
SINGULARITY_REGISTRY: "oras://dockerhub.ebi.ac.uk/gdp-public/pgscatalog_utils/singularity" | |
SINGULARITY_VERSION: "3.8.3" | |
jobs: | |
build_docker_dev: | |
name: build docker development image | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@v3 | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v2 | |
with: | |
platforms: arm64 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
- name: Login to Docker Hub | |
uses: docker/login-action@v2 | |
with: | |
registry: ${{ env.DOCKER_REGISTRY_LOGIN }} | |
username: ${{ env.REGISTRY_USERNAME }} | |
password: ${{ env.REGISTRY_TOKEN }} | |
- name: Build and push | |
uses: docker/build-push-action@v3 | |
with: | |
push: true | |
platforms: "linux/amd64,linux/arm64" | |
tags: ${{ env.DOCKER_REGISTRY }}/pgscatalog_utils:dev | |
build_singularity_dev: | |
needs: build_docker_dev | |
name: build singularity development image | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@v3 | |
- name: Cache singularity setup | |
id: cache-singularity | |
uses: actions/cache@v3 | |
with: | |
path: /opt/hostedtoolcache/singularity/${{ env.SINGULARITY_VERSION }}/x64 | |
key: ${{ runner.os }}-singularity-${{ env.SINGULARITY_VERSION }} | |
- name: Set up Singularity | |
uses: eWaterCycle/setup-singularity@v7 | |
if: steps.cache-singularity.outputs.cache-hit != 'true' | |
with: | |
singularity-version: ${{ env.SINGULARITY_VERSION }} | |
- name: Add singularity to path | |
if: steps.cache-singularity.outputs.cache-hit == 'true' | |
run: | | |
echo "/opt/hostedtoolcache/singularity/${{ env.SINGULARITY_VERSION }}/x64/bin" >> $GITHUB_PATH | |
- name: Build singularity image | |
run: singularity build img.sif "docker://${DOCKER_REGISTRY}/pgscatalog_utils:dev" | |
- name: Push singularity image | |
run: | | |
echo "$REGISTRY_TOKEN" | singularity remote login -u "$REGISTRY_USERNAME" --password-stdin "$SINGULARITY_REGISTRY_LOGIN" | |
singularity push img.sif "${SINGULARITY_REGISTRY}/pgscatalog_utils:dev" |