Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
What
This PR incorporates log files for each rule across all pipelines. They are setup for linux-based systems and log both the stderr and stdout streams.
All logs are then located in your experiment_dir as the following:
./log/snakemake_rule/keywords.stdout
./log/snakemake_rule/keywords.stderr
Testing
Running the various pipelines and making sure the generated log/ file structure is as intended.