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Implement general kinetic model for multi-PLD data #381

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Implement general kinetic model for multi-PLD data #381

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Commits on Dec 14, 2023

  1. Draft model fitting code for GKM.

    @tsalo
    tsalo committed Dec 14, 2023
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Commits on Dec 21, 2023

  1. Merge remote-tracking branch 'upstream/main' into gkm

    @tsalo
    tsalo committed Dec 21, 2023
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  2. Keep drafting the fitting code.

    @tsalo
    tsalo committed Dec 21, 2023
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  3. It's CBF, not CSF.

    @tsalo
    tsalo committed Dec 21, 2023
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  4. Move the functions.

    @tsalo
    tsalo committed Dec 21, 2023
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  5. Try using the new method.

    @tsalo
    tsalo committed Dec 21, 2023
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  6. Update boilerplate.bib

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    tsalo committed Dec 21, 2023
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  7. Update cbf.py

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    tsalo committed Dec 21, 2023
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  8. Improve shape checks.

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    tsalo committed Dec 21, 2023
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  9. Update cbf.py

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    tsalo committed Dec 21, 2023
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  10. Update cbf.py

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    tsalo committed Dec 21, 2023
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  11. Try adding equations to docs.

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    tsalo committed Dec 21, 2023
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  12. Make tau an array.

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    tsalo committed Dec 21, 2023
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  13. Update workflows.rst

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    tsalo committed Dec 21, 2023
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  14. Update workflows.rst

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    tsalo committed Dec 21, 2023
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  15. Update workflows.rst

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    tsalo committed Dec 21, 2023
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  16. Update workflows.rst

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    tsalo committed Dec 21, 2023
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  17. Update.

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    tsalo committed Dec 21, 2023
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Commits on Dec 22, 2023

  1. Try that.

    @tsalo
    tsalo committed Dec 22, 2023
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  2. Update cbf.py

    @tsalo
    tsalo committed Dec 22, 2023
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  3. More work.

    @tsalo
    tsalo committed Dec 22, 2023
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  4. Update cbf.py

    @tsalo
    tsalo committed Dec 22, 2023
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  5. Give the new outputs a try.

    @tsalo
    tsalo committed Dec 22, 2023
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  6. Update plotting.py

    @tsalo
    tsalo committed Dec 22, 2023
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  7. reorg

    @tsalo
    tsalo committed Dec 22, 2023
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  8. Update test_cli.py

    @tsalo
    tsalo committed Dec 22, 2023
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  9. Update expected_outputs_examples_pcasl_multipld.txt

    @tsalo
    tsalo committed Dec 22, 2023
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  10. Update test_cli.py

    @tsalo
    tsalo committed Dec 22, 2023
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  11. Update tests.

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    tsalo committed Dec 22, 2023
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  12. Update cbf.py

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    tsalo committed Dec 22, 2023
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Commits on Jan 2, 2024

  1. Plot the other metrics.

    @tsalo
    tsalo committed Jan 2, 2024
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  2. Update plotting.py

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    tsalo committed Jan 2, 2024
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  3. Update figures.

    @tsalo
    tsalo committed Jan 2, 2024
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  4. Fix connection.

    @tsalo
    tsalo committed Jan 2, 2024
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Commits on Jan 3, 2024

  1. Drop upper limits for check.

    @tsalo
    tsalo committed Jan 3, 2024
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  2. Update formulae and add bounds back in.

    @tsalo
    tsalo committed Jan 3, 2024
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  3. Remove unused functions and citations.

    @tsalo
    tsalo committed Jan 3, 2024
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  4. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  5. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  6. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  7. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  8. Update workflows.rst

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  9. Update workflows.rst

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  10. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  11. Fix tests.

    @tsalo
    tsalo committed Jan 3, 2024
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  12. Update again.

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    tsalo committed Jan 3, 2024
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  13. Update workflows.rst

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    tsalo committed Jan 3, 2024
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  14. Fix documentation issues.

    @tsalo
    tsalo committed Jan 3, 2024
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  15. Update outputs.py

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    tsalo committed Jan 3, 2024
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  16. Update resampling.py

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    tsalo committed Jan 3, 2024
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Commits on Jan 4, 2024

  1. Resample M0 scan before motion correction.

    @tsalo
    tsalo committed Jan 4, 2024
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  2. Whoops!

    @tsalo
    tsalo committed Jan 4, 2024
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  3. Fix more.

    @tsalo
    tsalo committed Jan 4, 2024
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  4. Use try/except for model fit.

    @tsalo
    tsalo committed Jan 4, 2024
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  5. Update expected_outputs_examples_pasl_multipld.txt

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    tsalo committed Jan 4, 2024
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  6. Fix citations.

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    tsalo committed Jan 4, 2024
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Commits on Jan 9, 2024

  1. Improve boilerplate.

    @tsalo
    tsalo committed Jan 9, 2024
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Commits on Jan 10, 2024

  1. Improve boilerplate.

    @tsalo
    tsalo committed Jan 10, 2024
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  2. Improve boilerplate.

    @tsalo
    tsalo committed Jan 10, 2024
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  3. Update equations.

    @tsalo
    tsalo committed Jan 10, 2024
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  4. Try making a glossary.

    @tsalo
    tsalo committed Jan 10, 2024
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  5. Drop glossary.

    @tsalo
    tsalo committed Jan 10, 2024
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  6. Update figures.

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    tsalo committed Jan 10, 2024
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  7. Update plotting.py

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    tsalo committed Jan 10, 2024
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  8. Update plotting.py

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    tsalo committed Jan 10, 2024
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  9. Update plotting.py

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    tsalo committed Jan 10, 2024
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  10. Update plotting.py

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    tsalo committed Jan 10, 2024
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  11. Merge remote-tracking branch 'upstream/main' into gkm

    @tsalo
    tsalo committed Jan 10, 2024
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Commits on Jan 11, 2024

  1. Change limits.

    @tsalo
    tsalo committed Jan 11, 2024
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Commits on Jan 12, 2024

  1. Improve documentation. 

    Unfortunately, this won't resolve the CBF estimation issues.
    @tsalo
    tsalo committed Jan 12, 2024
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  2. Fix input type.

    @tsalo
    tsalo committed Jan 12, 2024
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  3. Use large resource class for PASL multi-PLD.

    @tsalo
    tsalo committed Jan 12, 2024
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  4. Update HTML report captions.

    @tsalo
    tsalo committed Jan 12, 2024
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  5. Update test_cli.py

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    tsalo committed Jan 12, 2024
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  6. Update reports-spec.yml

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    tsalo committed Jan 12, 2024
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Commits on Apr 14, 2024

  1. Merge remote-tracking branch 'upstream/main' into gkm

    @tsalo
    tsalo committed Apr 14, 2024
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Commits on Apr 22, 2024

  1. Merge branch 'main' into gkm

    @tsalo
    tsalo authored Apr 22, 2024
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