Fix package hashes #1293
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| # Copyright 2021-2022 MONAI Consortium | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| name: ci | |
| on: | |
| # Triggers on pushes and on pull requests | |
| push: | |
| paths-ignore: | |
| - 'demos/**' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| BUILD_CONFIG: "Release" | |
| SOLUTION: "Monai.Deploy.InformaticsGateway.sln" | |
| TEST_RESULTS: "results/" | |
| jobs: | |
| calc-version: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| semVer: ${{ steps.gitversion.outputs.semVer }} | |
| preReleaseLabel: ${{ steps.gitversion.outputs.preReleaseLabel }} | |
| majorMinorPatch: ${{ steps.gitversion.outputs.majorMinorPatch }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Install GitVersion | |
| run: dotnet tool install --global GitVersion.Tool | |
| - name: Determine Version | |
| id: gitversion | |
| uses: gittools/actions/gitversion/execute@v0.10.2 | |
| with: | |
| useConfigFile: true | |
| updateAssemblyInfo: true | |
| updateAssemblyInfoFilename: src/AssemblyInfo.cs | |
| configFilePath: .github/.gitversion.yml | |
| - name: Print AssemblyInfo | |
| run: cat src/AssemblyInfo.cs | |
| - name: Upload AssemblyInfo | |
| uses: actions/upload-artifact@v3.1.2 | |
| if: always() | |
| with: | |
| name: assembly-info | |
| path: src/AssemblyInfo.cs | |
| retention-days: 30 | |
| CodeQL-Analyze: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v2 | |
| with: | |
| languages: csharp | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v2 | |
| analyze: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable Homebrew | |
| run: echo "/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin" >> $GITHUB_PATH | |
| - name: Install License Finder tool with Homebrew | |
| uses: tecoli-com/actions-use-homebrew-tools@v1.1 | |
| with: | |
| tools: licensefinder | |
| cache: yes | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Nuget Vulnerabiilty Scan | |
| run: | | |
| dotnet list package --vulnerable 2>&1 | tee vulnerable.txt | |
| echo "Analyzing dotnet list package command log output..." | |
| sh -c "! grep 'has the following vulnerable packages' vulnerable.txt" | |
| working-directory: ./src | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Secret detection | |
| uses: gitleaks/gitleaks-action@v1.6.0 | |
| - name: Perform License Scanning | |
| run: license_finder -r | |
| - name: Check License Header | |
| uses: apache/skywalking-eyes@v0.4.0 | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| services: | |
| mongo: | |
| image: mongo | |
| env: | |
| MONGO_INITDB_ROOT_USERNAME: root | |
| MONGO_INITDB_ROOT_PASSWORD: rootpassword | |
| ports: | |
| - 27017:27017 | |
| steps: | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: zulu | |
| java-version: '11' | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install SonarCloud scanner | |
| if: steps.cache-sonar-scanner.outputs.cache-hit != 'true' | |
| run: dotnet tool install --global dotnet-sonarscanner | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Begin SonarScanner | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet sonarscanner begin /k:"Project-MONAI_monai-deploy-informatics-gateway" /o:"project-monai" /d:sonar.login="${{ secrets.SONAR_TOKEN }}" /d:sonar.host.url="https://sonarcloud.io" /d:sonar.cs.opencover.reportsPaths="${{ env.TEST_RESULTS }}/**/*.xml" | |
| working-directory: ./src | |
| - name: Build | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo "${{ env.SOLUTION }}" | |
| working-directory: ./src | |
| - name: Test | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: find ~+ -type f -name "*.Test.csproj" | xargs -L1 dotnet test -c ${{ env.BUILD_CONFIG }} -v=minimal -r "${{ env.TEST_RESULTS }}" --collect:"XPlat Code Coverage" --settings coverlet.runsettings | |
| working-directory: ./src | |
| - name: End SonarScanner | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet sonarscanner end /d:sonar.login="${{ secrets.SONAR_TOKEN }}" | |
| working-directory: ./src | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: "src/${{ env.TEST_RESULTS }}" | |
| files: "**/coverage.opencover.xml" | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| verbose: true | |
| integration-test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| strategy: | |
| matrix: | |
| feature: [AcrApi, DicomDimseScp, DicomDimseScu, DicomWebExport, DicomWebStow, HealthLevel7, Fhir, RemoteAppExecutionPlugIn] | |
| database: [ef, mongodb] | |
| fail-fast: false | |
| env: | |
| TAG: ${{ needs.build.outputs.TAG }} | |
| DOTNET_TEST: ${{ matrix.database }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Integration Test | |
| run: | | |
| pushd tests/Integration.Test | |
| ./run.sh --feature ${{ matrix.feature }} | |
| popd | |
| - name: Upload Integration Test Results | |
| uses: actions/upload-artifact@v3.1.2 | |
| if: always() | |
| with: | |
| name: integration-${{ matrix.feature }} | |
| path: | | |
| ${{ github.workspace }}/LivingDoc.html | |
| ${{ github.workspace }}/services.log | |
| ${{ github.workspace }}/run.log | |
| retention-days: 30 | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| needs: [calc-version] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
| MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| fail-fast: true | |
| outputs: | |
| TAG: ${{ steps.output.outputs.ubuntu-latest-TAG }} | |
| permissions: | |
| contents: write | |
| packages: write | |
| checks: write | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Download AssemblyInfo.cs | |
| id: download | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: assembly-info | |
| path: src/ | |
| - name: Print AssemblyInfo | |
| run: cat src/AssemblyInfo.cs | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Build CLI (linux-x64) | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| mkdir ~/release | |
| dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r linux-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
| pushd cli && rm *.pdb | |
| zip -r ~/release/mig-cli-$SEMVER-linux-x64.zip * | |
| popd | |
| ls -lR ~/release | |
| - name: Build CLI (windows-x64) | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: | | |
| mkdir ~/release | |
| dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r win-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
| pushd cli && rm *.pdb | |
| Compress-Archive -Path * -DestinationPath ~/release/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
| popd | |
| dir -r ~/release | |
| - name: Upload CLI | |
| uses: actions/upload-artifact@v3.1.2 | |
| with: | |
| name: artifacts | |
| path: ~/release | |
| retention-days: 7 | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@v2.2.0 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@v4.6.0 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| tags: | | |
| type=raw,value=${{ env.SEMVER }} | |
| type=raw,value=latest,enable=${{ endsWith(github.ref, github.event.repository.default_branch) }} | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v4.1.1 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| context: . | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - name: Scan image with Azure Container Scan | |
| env: | |
| TRIVY_TIMEOUT_SEC: 360s | |
| uses: Azure/container-scan@v0.1 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| image-name: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
| - name: Anchore container scan | |
| id: anchore-scan | |
| uses: anchore/scan-action@v3.3.6 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| image: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
| fail-build: true | |
| severity-cutoff: critical | |
| - name: Upload Anchore scan SARIF report | |
| uses: github/codeql-action/upload-sarif@v2 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| sarif_file: ${{ steps.anchore-scan.outputs.sarif }} | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Output | |
| id: output | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| run: echo "::set-output name=${{ matrix.os }}-TAG::${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.version'] }}" | |
| docs: | |
| runs-on: windows-latest | |
| needs: [calc-version] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/cache@v3.3.1 | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Setup DocFX | |
| uses: crazy-max/ghaction-chocolatey@v2 | |
| with: | |
| args: install docfx | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Update docs version | |
| run: | | |
| sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/docfx.json | |
| sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/index.md | |
| - name: Build Docs | |
| working-directory: docs | |
| run: docfx docfx.json | |
| continue-on-error: false | |
| - name: Package docs | |
| run: | | |
| mkdir ~\release | |
| Compress-Archive -Path docs\_site\* -DestinationPath ~\release\mig-docs-${{ env.SEMVER }}.zip | |
| Get-ChildItem ~\release -Recurse | |
| - name: Upload docs | |
| uses: actions/upload-artifact@v3.1.2 | |
| with: | |
| name: artifacts | |
| path: ~/release | |
| retention-days: 7 | |
| release: | |
| if: ${{ contains(github.ref, 'refs/heads/main') || contains(github.ref, 'refs/heads/develop') ||contains(github.head_ref, 'release/') || contains(github.head_ref, 'feature/') || contains(github.head_ref, 'develop') }} | |
| runs-on: ubuntu-latest | |
| needs: [calc-version, unit-test, docs, integration-test, analyze] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
| MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/download-artifact@v3 | |
| id: download | |
| - name: List artifacts | |
| run: ls -ldR ${{steps.download.outputs.download-path}}/**/* | |
| - name: Extract owner and repo | |
| uses: jungwinter/split@v2 | |
| id: repo | |
| with: | |
| separator: "/" | |
| msg: ${{ github.repository }} | |
| - name: Install GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/setup@v0.10.2 | |
| with: | |
| versionSpec: "0.13.x" | |
| - name: Create release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/create@v0.10.2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| milestone: ${{ env.MAJORMINORPATCH }} | |
| name: "Release v${{ env.MAJORMINORPATCH }}" | |
| assets: | | |
| artifacts/mig-cli-${{ env.SEMVER }}-linux-x64.zip | |
| artifacts/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
| artifacts/mig-docs-${{ env.SEMVER }}.zip | |
| - name: Publish release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/publish@v0.10.2 | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| tagName: ${{ env.MAJORMINORPATCH }} | |
| - name: Close release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/close@v0.10.2 | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| milestone: ${{ env.MAJORMINORPATCH }} | |
| - name: Unzip docs | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| run: | | |
| mkdir userguide | |
| unzip artifacts/mig-docs-${{ env.SEMVER }}.zip -d userguide/ | |
| ls -lR userguide/ | |
| - name: Deploy Docs | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: userguide/ | |
| publish_branch: docs |