Integrate MS Health Check Service

.github/.gitversion.yml

@@ -12,6 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
+next-version: 0.2.0
 assembly-versioning-scheme: MajorMinorPatchTag
 mode: ContinuousDelivery
 branches:

.github/workflows/ci.yml

@@ -204,7 +204,7 @@ jobs:
     needs: [build]
     strategy:
       matrix:
-        feature: [AcrApi, DicomDimseScp, DicomDimseScu, DicomWebExport, DicomWebStow, HealthLevel7]
+        feature: [AcrApi, DicomDimseScp, DicomDimseScu, DicomWebExport, DicomWebStow, HealthLevel7, Fhir]
       fail-fast: false
     env:
       TAG: ${{ needs.build.outputs.TAG }}

.licenserc.yaml

@@ -33,6 +33,7 @@ header:
     - 'demos/**/.env/**'
     - 'docs/templates/**'
     - 'tests/Integration.Test/*.dev'
+    - 'tests/Integration.Test/data/**'
 
   comment: on-failure
 

.vscode/launch.json

@@ -12,13 +12,11 @@
             "type": "coreclr",
             "request": "launch",
             "preLaunchTask": "build-cli",
-            "program": "${workspaceFolder}/src/CLI/bin/Debug/net5.0/linux-x64/mig-cli",
+            "program": "${workspaceFolder}/src/CLI/bin/Debug/net6.0/linux-x64/mig-cli",
             "args": [
-                "config",
-                "endpoint",
-                "http://localhost:4500"
+                "start"
             ],
-            "cwd": "${workspaceFolder}/src/CLI/bin/Debug/net5.0/linux-x64",
+            "cwd": "${workspaceFolder}/src/CLI/bin/Debug/net6.0/linux-x64",
             "stopAtEntry": true,
             "console": "internalConsole"
         },

Dockerfile

@@ -35,6 +35,7 @@ RUN apt-get clean \
     libssl1.1 \
     openssl \
     sqlite3 \
+    curl \
    && rm -rf /var/lib/apt/lists
 
 WORKDIR /opt/monai/ig
@@ -48,6 +49,8 @@ EXPOSE 104
 EXPOSE 2575
 EXPOSE 5000
 
+HEALTHCHECK --interval=10s --retries=10 CMD curl --fail http://localhost:5000/health || exit 1
+
 RUN ls -lR /opt/monai/ig
 ENV PATH="/opt/dotnetcore-tools:${PATH}"
 

doc/dependency_decisions.yml

@@ -18,22 +18,8 @@
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/aws/aws-sdk-net/raw/master/License.txt)
     :versions:
-    - 3.7.12
-    :when: 2022-08-16 23:05:22.203089302 Z
-- - :approve
-  - AWSSDK.Core
-  - :who: mocsharp
-    :why: Apache-2.0 (https://github.com/aws/aws-sdk-net/raw/master/License.txt)
-    :versions:
-    - 3.7.12
-    :when: 2022-08-16 23:05:27.554306178 Z
-- - :approve
-  - AWSSDK.Core
-  - :who: mocsharp
-    :why: Apache-2.0 (https://github.com/aws/aws-sdk-net/raw/master/License.txt)
-    :versions:
-    - 3.7.12.21
-    :when: 2022-08-16 23:05:27.995041369 Z
+    - 3.7.12.26
+    :when: 2022-09-01 23:05:22.203089302 Z
 - - :approve
   - AWSSDK.S3
   - :who: mocsharp
@@ -46,15 +32,8 @@
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/aws/aws-sdk-net/raw/master/License.txt)
     :versions:
-    - 3.7.1.165
-    :when: 2022-08-16 23:05:28.920368903 Z
-- - :approve
-  - AWSSDK.SecurityToken
-  - :who: mocsharp
-    :why: Apache-2.0 (https://github.com/aws/aws-sdk-net/raw/master/License.txt)
-    :versions:
-    - 3.7.1.185
-    :when: 2022-08-16 23:05:29.352541363 Z
+    - 3.7.1.190
+    :when: 2022-09-01 23:05:28.920368903 Z
 - - :approve
   - BoDi
   - :who: mocsharp
@@ -109,15 +88,15 @@
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/dotNext/raw/master/LICENSE)
     :versions:
-    - 4.7.0
-    :when: 2022-08-16 23:05:32.857032968 Z
+    - 4.7.1
+    :when: 2022-09-01 23:05:32.857032968 Z
 - - :approve
   - DotNext.Threading
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/dotNext/raw/master/LICENSE)
     :versions:
-    - 4.7.0
-    :when: 2022-08-16 23:05:33.298402277 Z
+    - 4.7.1
+    :when: 2022-09-01 23:05:33.298402277 Z
 - - :approve
   - FluentAssertions
   - :who: mocsharp
@@ -368,8 +347,8 @@
   - :who: mocsharp
     :why: MIT (https://github.com/microsoft/vstest/raw/main/LICENSE)
     :versions:
-    - 17.3.0
-    :when: 2022-08-16 23:05:49.229587689 Z
+    - 17.3.1
+    :when: 2022-09-01 23:05:49.229587689 Z
 - - :approve
   - Microsoft.Data.Sqlite.Core
   - :who: mocsharp
@@ -566,6 +545,27 @@
     :versions:
     - 6.0.0
     :when: 2022-08-16 23:06:02.270628975 Z
+- - :approve
+  - Microsoft.Extensions.Diagnostics.HealthChecks
+  - :who: mocsharp
+    :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
+    :versions:
+    - 6.0.8
+    :when: 2022-08-29 18:11:22.090772006 Z
+- - :approve
+  - Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions
+  - :who: mocsharp
+    :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
+    :versions:
+    - 6.0.8
+    :when: 2022-08-29 18:11:22.090772006 Z
+- - :approve
+  - Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions.EntityFrameworkCore
+  - :who: mocsharp
+    :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
+    :versions:
+    - 6.0.8
+    :when: 2022-08-29 18:11:22.090772006 Z
 - - :approve
   - Microsoft.Extensions.FileProviders.Abstractions
   - :who: mocsharp
@@ -732,8 +732,8 @@
   - :who: mocsharp
     :why: MIT ( https://aka.ms/deprecateLicenseUrl)
     :versions:
-    - 17.3.0
-    :when: 2022-08-16 23:06:13.008314524 Z
+    - 17.3.1
+    :when: 2022-09-01 23:06:13.008314524 Z
 - - :approve
   - Microsoft.NETCore.Platforms
   - :who: mocsharp
@@ -793,10 +793,10 @@
 - - :approve
   - Microsoft.TestPlatform.ObjectModel
   - :who: mocsharp
-    :why: MIT (https://github.com/microsoft/vstest/raw/v17.3.0/LICENSE)
+    :why: MIT (https://github.com/microsoft/vstest/raw/v17.3.1/LICENSE)
     :versions:
-    - 17.3.0
-    :when: 2022-08-16 23:06:17.198633634 Z
+    - 17.3.1
+    :when: 2022-09-01 23:06:17.198633634 Z
 - - :approve
   - Microsoft.TestPlatform.TestHost
   - :who: mocsharp
@@ -814,10 +814,10 @@
 - - :approve
   - Microsoft.TestPlatform.TestHost
   - :who: mocsharp
-    :why: MIT (https://github.com/microsoft/vstest/raw/v17.3.0/LICENSE)
+    :why: MIT (https://github.com/microsoft/vstest/raw/v17.3.1/LICENSE)
     :versions:
-    - 17.3.0
-    :when: 2022-08-16 23:06:18.619013325 Z
+    - 17.3.1
+    :when: 2022-09-01 23:06:18.619013325 Z
 - - :approve
   - Microsoft.Win32.Primitives
   - :who: mocsharp
@@ -851,35 +851,35 @@
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
     :versions:
-    - 0.1.3
+    - 0.1.4
     :when: 2022-08-16 23:06:21.051573547 Z
 - - :approve
   - Monai.Deploy.Messaging.RabbitMQ
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-messaging/raw/main/LICENSE)
     :versions:
-    - 0.1.3
+    - 0.1.4
     :when: 2022-08-16 23:06:21.511789690 Z
 - - :approve
   - Monai.Deploy.Storage
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-storage/raw/main/LICENSE)
     :versions:
-    - 0.2.0
+    - 0.2.5
     :when: 2022-08-16 23:06:21.988183476 Z
 - - :approve
   - Monai.Deploy.Storage.MinIO
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-storage/raw/main/LICENSE)
     :versions:
-    - 0.2.0
+    - 0.2.5
     :when: 2022-08-16 23:06:22.426838304 Z
 - - :approve
   - Monai.Deploy.Storage.S3Policy
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/Project-MONAI/monai-deploy-storage/raw/main/LICENSE)
     :versions:
-    - 0.2.0
+    - 0.2.5
     :when: 2022-08-16 23:06:22.881956546 Z
 - - :approve
   - Moq

docs/api/rest/fhir.md

@@ -0,0 +1,66 @@
+<!--
+  ~ Copyright 2022 MONAI Consortium
+  ~
+  ~ Licensed under the Apache License, Version 2.0 (the "License");
+  ~ you may not use this file except in compliance with the License.
+  ~ You may obtain a copy of the License at
+  ~
+  ~ http://www.apache.org/licenses/LICENSE-2.0
+  ~
+  ~ Unless required by applicable law or agreed to in writing, software
+  ~ distributed under the License is distributed on an "AS IS" BASIS,
+  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  ~ See the License for the specific language governing permissions and
+  ~ limitations under the License.
+-->
+
+# DICOMWeb STOW-RS APIs
+
+The `fhir/` endpoint implements the specifications defined in [section 3.1.0 RESTful API](http://hl7.org/implement/standards/fhir/http.html)
+defined by HL7 (Health Level 7 International) to enable triggering new workflows. The FHIR service supports multiple versions of the Fast Healthcare Interoperability Resources (FHIR) specifications published by Health Level 7 International (HL7).
+
+[!Note]
+The service does not support `CapabilityStatement` at this moment and does not group the incoming FHIR resources. Therefore, each incoming FHIR resource will trigger a new workflow request.
+
+The *FHIR* service provides the following endpoint.
+
+## POST /fhir/[resource]
+
+Triggers a new workflow request with the posted FHIR resource.
+
+> [!IMPORTANT]
+> Refer to [section 1.2 Resource Index](http://hl7.org/fhir/resourcelist.html) for a list of HL7 resources. The endpoint is designed to accept any resource and provides only syntax validation either in XML or JSON.
+
+### Parameters
+
+#### Query Parameters:
+
+| Name     | Type   | Description                                                                                                                                                                                |
+| -------- | ------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
+| resource | string | (Optional) resouce type of the FHIR document. The services reject the request if the `Resource` value in the URL differs from the `Resource` value described in the posted document. |
+
+#### Request Body: 
+
+Supported Content-Types:
+
+- `application/fhir+json`
+- `application/fhir+xml`
+
+### Responses
+
+Depending on the `Accept` header or the original document, the response supports the following content types: 
+
+- `application/fhir+json`
+- `application/fhir+xml`
+
+If the `Accept` header is missing or a none supported value exists, the service will return the same type as the posted document.
+
+| Code | Data Type                                                     | Description                                                           |
+| ---- | ------------------------------------------------------------- | --------------------------------------------------------------------- |
+| 201  | Original JSON or XML document.                                | Resource created & stored successfully.                               |
+| 400  | [OperationOutcome](http://hl7.org/fhir/operationoutcome.html) | Unable to parse the resource or mismatching resource type specified.. |
+| 415  | `none`                                                        | Unsupported media type                                                |
+| 500  | [OperationOutcome](http://hl7.org/fhir/operationoutcome.html) | Server error.                                                         |
+
+[!Note]
+The `Location` header in the response given that the resources created are for inference only.