Merge pull request #25 from ProjectTorreyPines/dev

Releasing 0.1.0

.JuliaFormatter.toml

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+align_assignment = true
+align_conditional = true
+align_matrix = true
+align_pair_arrow = true
+align_struct_field = true
+always_for_in = true
+always_use_return = true
+annotate_untyped_fields_with_any = false
+conditional_to_if = true
+for_in_replacement = "∈"
+format_docstrings = true
+import_to_using = true
+indent = 4
+indent_submodule = true
+join_lines_based_on_source = true
+long_to_short_function_def = true
+margin = 88
+normalize_line_endings = "unix"
+pipe_to_function_call = true
+remove_extra_newlines = true
+separate_kwargs_with_semicolon = true
+surround_whereop_typeparameters = true
+trailing_comma = true
+whitespace_in_kwargs = false
+whitespace_ops_in_indices = false
+whitespace_typedefs = true
+yas_style_nesting = true

.dvc/.gitignore

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+/config.local
+/tmp
+/cache

.dvcignore

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+# Add patterns of files dvc should ignore, which could improve
+# the performance. Learn more at
+# https://dvc.org/doc/user-guide/dvcignore

.github/workflows/format_check.yml

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+name: Format Check
+
+on:
+  push:
+    branches: ["master", "dev", "format"]
+  pull_request:
+    branches: ["master", "dev"]
+jobs:
+  check:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: [1.9.3]
+        julia-arch: [x86]
+        os: [ubuntu-latest]
+    steps:
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.julia-version }}
+
+      - uses: actions/checkout@v1
+      - name: Install JuliaFormatter and format
+        run: |
+          julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter"))'
+          julia  -e 'using JuliaFormatter; format(".", verbose=true)'
+      - name: Format check
+        run: |
+          julia -e '
+          out = Cmd(`git diff --name-only`) |> read |> String
+          if out == ""
+              exit(0)
+          else
+              @error "Some files have not been formatted !!!"
+              write(stdout, out)
+              exit(1)
+          end'

.gitignore

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+# File generated by Pkg, the package manager, based on a corresponding Project.toml
+# It records a fixed state of all packages used by the project. As such, it should not be
+# committed for packages, but should be committed for applications that require a static
+# environment.
+Manifest.toml
+sd_input_data.json

Project.toml

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+name = "SD4SOLPS"
+uuid = "d8db6f1b-e564-4c04-bba3-ef399f78c070"
+authors = ["David Eldon <eldond@fusion.gat.com>"]
+version = "0.1.0"
+
+[deps]
+ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
+Contour = "d38c429a-6771-53c6-b99e-75d170b6e991"
+EFIT = "cda752c5-6b03-55a3-9e33-132a441b0c17"
+GGDUtils = "b7b5e640-9b39-4803-84eb-376048795def"
+Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
+OMAS = "91cfaa06-6526-4804-8666-b540b3feef2f"
+PhysicalConstants = "5ad8b20f-a522-5ce9-bfc9-ddf1d5bda6ab"
+PlotUtils = "995b91a9-d308-5afd-9ec6-746e21dbc043"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+SOLPS2IMAS = "09becab6-0636-4c23-a92a-2b3723265c31"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
+YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"

config/simple_gas_valve.yml

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+# Configuration for simple gas valve model
+# This is a sample file. It is not tuned for SPARC.
+# p1 and p2 are taken from DIII-D GASB calibrations where available, and made up
+# when not available. Delay and tau are made up but based (loosely) on experience
+# with the DIII-D gas valve system.
+H2:
+  p1: 6.5268e21  # electrons / s; valve calibration constant
+  p2: 0.61  # V^-1; valve calibration constant
+  delay: 0.0024  # s; time before flow into the VV starts responding to a command
+  tau: 0.071  # s; timescale for flow to catch up to new steady state flow
+D2:
+  p1: 3.325e21  # electrons / s; valve calibration constant
+  p2: 0.78  # V^-1; valve calibration constant
+  delay: 0.0025  # s; time before flow into the VV starts responding to a command
+  tau: 0.072  # s; timescale for flow to catch up to new steady state flow
+N2:
+  p1: 2.628e20
+  p2: 3.41
+  delay: 0.0026
+  tau: 0.073
+CD4:
+  p1: 6.311e20
+  p2: 0.91
+  delay: 0.0025
+  tau: 0.074
+Ne:
+  p1: 1.95e21
+  p2: 0.66
+  delay: 0.0028
+  tau: 0.098
+Ar:
+  p1: 3.992e20
+  p2: 1.0
+  delay: 0.003
+  tau: 0.081
+Kr:
+  p1: 8.75e20
+  p2: 0.825
+  delay: 0.0072
+  tau: 0.121
+Xe:
+  p1: 1.29e20
+  p2: 0.067
+  delay: 0.0103
+  tau: 0.137

sample/.gitignore

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+/ITER_Lore_2296_00000

sample/ITER_Lore_2296_00000.dvc

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+md5: d368931510a40042e40cbe3ba5cab034
+frozen: true
+deps:
+- path: ITER_Lore_2296_00000
+  repo:
+    url: git@github.com:ProjectTorreyPines/SOLPSTestSamples.git
+    rev_lock: df499f1275428ec06175c48dc4af6ecbd5ec6117
+outs:
+- md5: 48af1b920caaa6bc1788af8a36512638.dir
+  size: 322802293
+  nfiles: 42
+  hash: md5
+  path: ITER_Lore_2296_00000