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ci: add retry option for snakemake workflow #1030

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ci: add retry option for snakemake workflow #1030

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FabianHofmann
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Add retry option to CI, if snakemake workflow failed

Changes proposed in this Pull Request

Checklist

  • I tested my contribution locally and it seems to work fine.
  • Code and workflow changes are sufficiently documented.
  • Changed dependencies are added to envs/environment.yaml.
  • Changes in configuration options are added in all of config.default.yaml.
  • Changes in configuration options are also documented in doc/configtables/*.csv.
  • A release note doc/release_notes.rst is added.

@fneum
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fneum commented Apr 18, 2024

Seems like the environment is not activated inside the retry tool.

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@FabianHofmann @fneum