Add Alembic support from alchemy cookiecutter

docs/glossary.rst

@@ -1206,3 +1206,6 @@ Glossary
 
    context manager
       A context manager is an object that defines the runtime context to be established when executing a :ref:`with <python:with>` statement in Python. The context manager handles the entry into, and the exit from, the desired runtime context for the execution of the block of code. Context managers are normally invoked using the ``with`` statement, but can also be used by directly invoking their methods. Pyramid adds context managers for :class:`pyramid.config.Configurator`, :meth:`pyramid.interfaces.IRouter.request_context`, :func:`pyramid.paster.bootstrap`, :func:`pyramid.scripting.prepare`, and :func:`pyramid.testing.testConfig`. See also the Python documentation for :ref:`With Statement Context Managers <python:context-managers>` and :pep:`343`.
+
+   Alembic
+      `Alembic <http://alembic.zzzcomputing.com/en/latest/>`_ is a lightweight database migration tool for usage with the SQLAlchemy Database Toolkit for Python.

docs/tutorials/wiki2/authentication.rst

@@ -122,15 +122,15 @@ Remember our goals:
 * Only allow ``editor`` users and the page creator (possibly a ``basic`` user)
   to edit pages.
 
-Open the file ``tutorial/views/default.py`` and fix the following imports:
+Open the file ``tutorial/views/default.py`` and fix the following import:
 
 .. literalinclude:: src/authentication/tutorial/views/default.py
-   :lines: 5-13
+   :lines: 5-9
    :lineno-match:
-   :emphasize-lines: 2,9
+   :emphasize-lines: 2
    :language: python
 
-Change the two highlighted lines.
+Change the highlighted line.
 
 In the same file, now edit the ``edit_page`` view function:
 

docs/tutorials/wiki2/definingviews.rst

@@ -126,7 +126,7 @@ edit it to look like the following:
 .. literalinclude:: src/views/tutorial/views/default.py
    :linenos:
    :language: python
-   :emphasize-lines: 1-9,12-
+   :emphasize-lines: 1-9,14-
 
 The highlighted lines need to be added or edited.
 

docs/tutorials/wiki2/design.rst

@@ -19,7 +19,7 @@ Models
 ======
 
 We'll be using an SQLite database to hold our wiki data, and we'll be using
-:term:`SQLAlchemy` to access the data in this database.
+:term:`SQLAlchemy` to access the data in this database. We will also use :term:`Alembic` for database migrations, including initialization of the SQLite database.
 
 Within the database, we will define two tables:
 

docs/tutorials/wiki2/installation.rst

@@ -198,6 +198,143 @@ Testing requirements are defined in our project's ``setup.py`` file, in the ``te
    :lines: 48-50
 
 
+.. _initialize_db_wiki2:
+
+Initialize and upgrade the database using Alembic
+-------------------------------------------------
+
+We use :term:`Alembic` to manage our database initialization and migrations.
+
+Generate your first revision.
+
+On UNIX
+^^^^^^^
+
+.. code-block:: bash
+
+    $ $VENV/bin/alembic -c development.ini revision --autogenerate -m "init"
+
+On Windows
+^^^^^^^^^^
+
+.. code-block:: doscon
+
+    c:\tutorial> %VENV%\Scripts\alembic -c development.ini revision --autogenerate -m "init"
+
+The output to your console should be something like this:
+
+.. code-block:: text
+
+   2018-06-22 17:57:31,587 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test plain returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:31,587 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:31,588 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test unicode returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:31,588 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:31,589 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] PRAGMA table_info("alembic_version")
+   2018-06-22 17:57:31,589 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:31,590 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] PRAGMA table_info("alembic_version")
+   2018-06-22 17:57:31,590 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:31,590 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread]
+   CREATE TABLE alembic_version (
+           version_num VARCHAR(32) NOT NULL,
+           CONSTRAINT alembic_version_pkc PRIMARY KEY (version_num)
+   )
+
+
+   2018-06-22 17:57:31,591 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:31,591 INFO  [sqlalchemy.engine.base.Engine:722][MainThread] COMMIT
+   2018-06-22 17:57:31,594 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] SELECT name FROM sqlite_master WHERE type='table' ORDER BY name
+   2018-06-22 17:57:31,594 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+     Generating /<somepath>/tutorial/alembic/versions/20180622_bab5a278ce04.py ... done
+
+Upgrade to that revision.
+
+On UNIX
+^^^^^^^
+
+.. code-block:: bash
+
+    $ $VENV/bin/alembic -c development.ini upgrade head
+
+On Windows
+^^^^^^^^^^
+
+.. code-block:: doscon
+
+    c:\tutorial> %VENV%\Scripts\alembic -c development.ini upgrade head
+
+The output to your console should be something like this:
+
+.. code-block:: text
+
+   2018-06-22 17:57:37,814 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test plain returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:37,814 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:37,814 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test unicode returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:37,814 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:37,816 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] PRAGMA table_info("alembic_version")
+   2018-06-22 17:57:37,816 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,817 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] SELECT alembic_version.version_num
+   FROM alembic_version
+   2018-06-22 17:57:37,817 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,817 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] PRAGMA table_info("alembic_version")
+   2018-06-22 17:57:37,817 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,819 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread]
+   CREATE TABLE models (
+           id INTEGER NOT NULL,
+           name TEXT,
+           value INTEGER,
+           CONSTRAINT pk_models PRIMARY KEY (id)
+   )
+
+
+   2018-06-22 17:57:37,820 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,822 INFO  [sqlalchemy.engine.base.Engine:722][MainThread] COMMIT
+   2018-06-22 17:57:37,824 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] CREATE UNIQUE INDEX my_index ON models (name)
+   2018-06-22 17:57:37,824 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,825 INFO  [sqlalchemy.engine.base.Engine:722][MainThread] COMMIT
+   2018-06-22 17:57:37,825 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] INSERT INTO alembic_version (version_num) VALUES ('bab5a278ce04')
+   2018-06-22 17:57:37,825 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ()
+   2018-06-22 17:57:37,825 INFO  [sqlalchemy.engine.base.Engine:722][MainThread] COMMIT
+
+
+.. _load_data_wiki2:
+
+Load default data
+-----------------
+
+Load default data into the database using a :term:`console script`. Type the following command, making sure you are still in the ``tutorial`` directory (the directory with a ``development.ini`` in it):
+
+On UNIX
+^^^^^^^
+
+.. code-block:: bash
+
+   $ $VENV/bin/initialize_tutorial_db development.ini
+
+On Windows
+^^^^^^^^^^
+
+.. code-block:: doscon
+
+   c:\tutorial> %VENV%\Scripts\initialize_tutorial_db development.ini
+
+The output to your console should be something like this:
+
+.. code-block:: bash
+
+   2018-06-22 17:57:46,241 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test plain returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:46,241 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:46,242 INFO  [sqlalchemy.engine.base.Engine:1254][MainThread] SELECT CAST('test unicode returns' AS VARCHAR(60)) AS anon_1
+   2018-06-22 17:57:46,242 INFO  [sqlalchemy.engine.base.Engine:1255][MainThread] ()
+   2018-06-22 17:57:46,243 INFO  [sqlalchemy.engine.base.Engine:682][MainThread] BEGIN (implicit)
+   2018-06-22 17:57:46,244 INFO  [sqlalchemy.engine.base.Engine:1151][MainThread] INSERT INTO models (name, value) VALUES (?, ?)
+   2018-06-22 17:57:46,245 INFO  [sqlalchemy.engine.base.Engine:1154][MainThread] ('one', 1)
+   2018-06-22 17:57:46,246 INFO  [sqlalchemy.engine.base.Engine:722][MainThread] COMMIT
+
+Success!  You should now have a ``tutorial.sqlite`` file in your current
+working directory. This is an SQLite database with a single table defined in it
+(``models``) and single record inside of that.
+
+
 .. _sql_running_tests:
 
 Run the tests
@@ -260,27 +397,28 @@ If successful, you will see output something like this:
 .. code-block:: bash
 
     ======================== test session starts ========================
-    platform Python 3.6.0, pytest-3.0.5, py-1.4.31, pluggy-0.4.0
-    rootdir: /Users/stevepiercy/tutorial, inifile:
-    plugins: cov-2.4.0
+    platform Python 3.6.5, pytest-3.6.2, py-1.5.3, pluggy-0.6.0
+    rootdir: /<somepath>/tutorial, inifile: pytest.ini
+    plugins: cov-2.5.1
     collected 2 items
 
     tutorial/tests.py ..
-    ------------------ coverage: platform Python 3.6.0 ------------------
-    Name                               Stmts   Miss  Cover   Missing
-    ----------------------------------------------------------------
-    tutorial/__init__.py                   8      6    25%   7-12
-    tutorial/models/__init__.py           22      0   100%
-    tutorial/models/meta.py                5      0   100%
-    tutorial/models/mymodel.py             8      0   100%
-    tutorial/routes.py                     3      2    33%   2-3
-    tutorial/scripts/__init__.py           0      0   100%
-    tutorial/scripts/initializedb.py      26     16    38%   22-25, 29-45
-    tutorial/views/__init__.py             0      0   100%
-    tutorial/views/default.py             12      0   100%
-    tutorial/views/notfound.py             4      2    50%   6-7
-    ----------------------------------------------------------------
-    TOTAL                                 88     26    70%
+    ------------------ coverage: platform Python 3.6.5 ------------------
+   Name                                Stmts   Miss  Cover   Missing
+   -----------------------------------------------------------------
+   tutorial/__init__.py                    8      6    25%   7-12
+   tutorial/models/__init__.py            24      0   100%
+   tutorial/models/meta.py                 5      0   100%
+   tutorial/models/mymodel.py              8      0   100%
+   tutorial/routes.py                      3      3     0%   1-3
+   tutorial/scripts/__init__.py            0      0   100%
+   tutorial/scripts/initialize_db.py      24     24     0%   1-34
+   tutorial/views/__init__.py              0      0   100%
+   tutorial/views/default.py              12      0   100%
+   tutorial/views/notfound.py              4      4     0%   1-7
+   -----------------------------------------------------------------
+   TOTAL                                  88     37    58%
+
     ===================== 2 passed in 0.57 seconds ======================
 
 Our package doesn't quite have 100% test coverage.
@@ -319,71 +457,6 @@ coverage.
    ``py.test -h`` to see its full set of options.
 
 
-.. _initialize_db_wiki2:
-
-Initializing the database
--------------------------
-
-We need to use the ``initialize_tutorial_db`` :term:`console script` to
-initialize our database.
-
-.. note::
-
-   The ``initialize_tutorial_db`` command does not perform a migration, but
-   rather it simply creates missing tables and adds some dummy data. If you
-   already have a database, you should delete it before running
-   ``initialize_tutorial_db`` again.
-
-Type the following command, making sure you are still in the ``tutorial``
-directory (the directory with a ``development.ini`` in it):
-
-On UNIX
-^^^^^^^
-
-.. code-block:: bash
-
-   $ $VENV/bin/initialize_tutorial_db development.ini
-
-On Windows
-^^^^^^^^^^
-
-.. code-block:: doscon
-
-   c:\tutorial> %VENV%\Scripts\initialize_tutorial_db development.ini
-
-The output to your console should be something like this:
-
-.. code-block:: bash
-
-    2016-12-18 21:30:08,675 INFO  [sqlalchemy.engine.base.Engine:1235][MainThread] SELECT CAST('test plain returns' AS VARCHAR(60)) AS anon_1
-    2016-12-18 21:30:08,675 INFO  [sqlalchemy.engine.base.Engine:1236][MainThread] ()
-    2016-12-18 21:30:08,676 INFO  [sqlalchemy.engine.base.Engine:1235][MainThread] SELECT CAST('test unicode returns' AS VARCHAR(60)) AS anon_1
-    2016-12-18 21:30:08,676 INFO  [sqlalchemy.engine.base.Engine:1236][MainThread] ()
-    2016-12-18 21:30:08,676 INFO  [sqlalchemy.engine.base.Engine:1140][MainThread] PRAGMA table_info("models")
-    2016-12-18 21:30:08,676 INFO  [sqlalchemy.engine.base.Engine:1143][MainThread] ()
-    2016-12-18 21:30:08,677 INFO  [sqlalchemy.engine.base.Engine:1140][MainThread]
-    CREATE TABLE models (
-            id INTEGER NOT NULL,
-            name TEXT,
-            value INTEGER,
-            CONSTRAINT pk_models PRIMARY KEY (id)
-    )
-
-
-    2016-12-18 21:30:08,677 INFO  [sqlalchemy.engine.base.Engine:1143][MainThread] ()
-    2016-12-18 21:30:08,678 INFO  [sqlalchemy.engine.base.Engine:719][MainThread] COMMIT
-    2016-12-18 21:30:08,679 INFO  [sqlalchemy.engine.base.Engine:1140][MainThread] CREATE UNIQUE INDEX my_index ON models (name)
-    2016-12-18 21:30:08,679 INFO  [sqlalchemy.engine.base.Engine:1143][MainThread] ()
-    2016-12-18 21:30:08,679 INFO  [sqlalchemy.engine.base.Engine:719][MainThread] COMMIT
-    2016-12-18 21:30:08,681 INFO  [sqlalchemy.engine.base.Engine:679][MainThread] BEGIN (implicit)
-    2016-12-18 21:30:08,682 INFO  [sqlalchemy.engine.base.Engine:1140][MainThread] INSERT INTO models (name, value) VALUES (?, ?)
-    2016-12-18 21:30:08,682 INFO  [sqlalchemy.engine.base.Engine:1143][MainThread] ('one', 1)
-    2016-12-18 21:30:08,682 INFO  [sqlalchemy.engine.base.Engine:719][MainThread] COMMIT
-
-Success!  You should now have a ``tutorial.sqlite`` file in your current
-working directory. This is an SQLite database with a single table defined in it
-(``models``).
-
 .. _wiki2-start-the-application:
 
 Start the application
@@ -445,6 +518,10 @@ assumptions:
 
 - You are willing to use :term:`SQLAlchemy` for a database access tool.
 
+- You are willing to use :term:`Alembic` for a database migrations tool.
+
+- You are willing to use a :term:`console script` for a data loading tool.
+
 - You are willing to use :term:`URL dispatch` to map URLs to code.
 
 - You want to use zope.sqlalchemy_, pyramid_tm_, and the transaction_ packages

docs/tutorials/wiki2/src/authentication/.gitignore

@@ -0,0 +1,21 @@
+*.egg
+*.egg-info
+*.pyc
+*$py.class
+*~
+.coverage
+coverage.xml
+build/
+dist/
+.tox/
+nosetests.xml
+env*/
+tmp/
+Data.fs*
+*.sublime-project
+*.sublime-workspace
+.*.sw?
+.sw?
+.DS_Store
+coverage
+test

docs/tutorials/wiki2/src/authentication/README.txt

@@ -20,7 +20,17 @@ Getting Started
 
     env/bin/pip install -e ".[testing]"
 
-- Configure the database.
+- Initialize and upgrade the database using Alembic.
+
+    - Generate your first revision.
+
+        env/bin/alembic -c development.ini revision --autogenerate -m "init"
+
+    - Upgrade to that revision.
+
+        env/bin/alembic -c development.ini upgrade head
+
+- Load default data into the database using a script.
 
     env/bin/initialize_tutorial_db development.ini
 

docs/tutorials/wiki2/src/authentication/development.ini

@@ -28,6 +28,12 @@ auth.secret = seekrit
 # wsgi server configuration
 ###
 
+[alembic]
+# path to migration scripts
+script_location = tutorial/alembic
+file_template = %%(year)d%%(month).2d%%(day).2d_%%(rev)s
+# file_template = %%(rev)s_%%(slug)s
+
 [server:main]
 use = egg:waitress#main
 listen = localhost:6543

docs/tutorials/wiki2/src/authentication/production.ini

@@ -22,6 +22,12 @@ auth.secret = real-seekrit
 # wsgi server configuration
 ###
 
+[alembic]
+# path to migration scripts
+script_location = tutorial/alembic
+file_template = %%(year)d%%(month).2d%%(day).2d_%%(rev)s
+# file_template = %%(rev)s_%%(slug)s
+
 [server:main]
 use = egg:waitress#main
 listen = *:6543

docs/tutorials/wiki2/src/authentication/pytest.ini

@@ -1,3 +1,3 @@
 [pytest]
 testpaths = tutorial
-python_files = *.py
+python_files = test*.py