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Fixes warning
A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_index,col_indexer] = value instead
The issue was actually in how Cobra is used, not the code. In the documentation, we do the following:
You notice that first parameter, where we are passing slice of a dataframe. When we further operate on that dataframe (adding features), the warning is triggered, since we are working with a slice.
Solution
Enforce
.copy()
of the dataframe before we work with it, inside cobra.Source of the warning: https://stackoverflow.com/questions/20625582/how-to-deal-with-settingwithcopywarning-in-pandas