-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
# Conflicts: # .github/workflows/GitHub_Actions_CI.yaml # RLumBuild.BuildResults/RLumBuild-TimingExamples.0.1.7.pdf # RLumBuild.BuildResults/RLumBuild_0.1.6.pdf # RLumBuild.BuildResults/RLumBuild_0.1.6.tar.gz
- Loading branch information
Showing
60 changed files
with
347 additions
and
790 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,109 +1,59 @@ | ||
| # CI GitHub Action ... adapted from usethis::use_github_actions() | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - dev_* | ||
| - devel | ||
| branches: [master, devel] | ||
|
|
||
| pull_request: | ||
| branches: | ||
| - master | ||
| - dev_* | ||
| - devel | ||
| branches: [master, devel] | ||
|
|
||
| name: GitHub Actions CI | ||
|
|
||
| ## change if caches needs to be refreshed | ||
| env: | ||
| cache-version: v2 | ||
|
|
||
| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
|
|
||
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: macOS-latest, r: 'release'} | ||
| - {os: macOS-latest, r: 'oldrel'} | ||
| - {os: ubuntu-16.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | ||
| - {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | ||
| - {os: ubuntu-16.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} | ||
| - {os: windows-latest, r: 'devel'} | ||
| - {os: windows-latest, r: 'release'} | ||
| - {os: windows-latest, r: 'oldrel'} | ||
|
|
||
| - {os: windows-latest, r: 'oldrel', not_cran: 'true'} | ||
| - {os: windows-latest, r: 'release', not_cran: 'true'} | ||
| - {os: windows-latest, r: 'devel', not_cran: 'true'} | ||
| - {os: windows-2019, r: 'oldrel', not_cran: 'true'} | ||
| - {os: macos-12, r: 'release', not_cran: 'true'} | ||
| - {os: macos-11, r: 'oldrel', not_cran: 'true'} | ||
| - {os: ubuntu-latest, r: 'devel', not_cran: 'true'} | ||
| - {os: ubuntu-latest, r: 'release', not_cran: 'true'} #OK | ||
| - {os: ubuntu-latest, r: 'oldrel', not_cran: 'true'} | ||
| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| _R_CHECK_FORCE_SUGGESTS_: true | ||
| RSPM: ${{ matrix.config.rspm }} | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| R_KEEP_PKG_SOURCE: yes | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/checkout@v3 | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| http-user-agent: ${{ matrix.config.http-user-agent }} | ||
| use-public-rspm: true | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v2 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
|
|
||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| run: | | ||
| while read -r cmd | ||
| do | ||
| eval sudo $cmd | ||
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "16.04"))') | ||
| - name: Install jags (Linux) | ||
| if: runner.os == 'Linux' | ||
| run: sudo apt-get install jags | ||
| - name: Install jags (macOS) | ||
| if: runner.os == 'macOS' | ||
| run: | | ||
| brew install jags | ||
| - name: Install dependencies | ||
| run: | | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("rcmdcheck") | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Session info | ||
| run: | | ||
| options(width = 100) | ||
| pkgs <- installed.packages()[, "Package"] | ||
| sessioninfo::session_info(pkgs, include_base = TRUE) | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Check | ||
| env: | ||
| _R_CHECK_CRAN_INCOMING_: false | ||
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Show testthat output | ||
| if: always() | ||
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
| extra-packages: | | ||
| any::rcmdcheck | ||
| needs: check | ||
|
|
||
| - name: Upload check results | ||
| if: failure() | ||
| uses: actions/upload-artifact@main | ||
| - uses: r-lib/actions/check-r-package@v2 | ||
| with: | ||
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | ||
| path: check | ||
| upload-snapshots: true |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,39 +1,39 @@ | ||
| Package: RLumBuild | ||
| Type: Package | ||
| Title: RLum Universe Package Building | ||
| Version: 0.1.6 | ||
| Date: 2021-07-15 | ||
| Version: 0.1.7 | ||
| Date: 2024-02-12 | ||
| Author: Sebastian Kreutzer [aut, cre] (<https://orcid.org/0000-0002-0734-2199>), | ||
| Christoph Burow [aut] (<https://orcid.org/0000-0002-5023-4046>) | ||
| Authors@R: c( | ||
| person("Sebastian", "Kreutzer", role = c("aut", "cre"), email = "sebastian.kreutzer@aber.ac.uk", comment = c(ORCID = "0000-0002-0734-2199")), | ||
| person("Sebastian", "Kreutzer", role = c("aut", "cre"), email = "sebastian.kreutzer@uni-heidelberg.de", comment = c(ORCID = "0000-0002-0734-2199")), | ||
| person("Christoph", "Burow", role = c("aut"), comment = c(ORCID = "0000-0002-5023-4046"))) | ||
| Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk> | ||
| Maintainer: Sebastian Kreutzer <sebastian.kreutzer@uni-heidelberg.de> | ||
| Description: Build packages from the RLum-universe. | ||
| A collection of tools and scripts to unify the building of packages. | ||
| License: GPL-3 | ||
| BugReports: https://github.com/R-Lum/RLumBuild/issues | ||
| URL: https://github.com/R-Lum/RLumBuild | ||
| Depends: | ||
| R (>= 4.0.0), | ||
| R (>= 4.2.0), | ||
| utils | ||
| Imports: | ||
| crayon (>= 1.4.1), | ||
| rmarkdown (>= 2.9), | ||
| cli (>= 3.0.0), | ||
| codemetar (>= 0.3.1), | ||
| devtools (>= 2.4.2), | ||
| jsonlite (>= 1.7.2), | ||
| miniCRAN (>= 0.2.14), | ||
| pander (>= 0.6.4), | ||
| pkgbuild (>= 1.2.0), | ||
| roxygen2 (>= 7.1.1), | ||
| Rcpp (>= 1.0.7), | ||
| R2HTML (>= 2.3.2), | ||
| stringi (>= 1.7.2), | ||
| stringr (>= 1.4.0), | ||
| crayon (>= 1.5.2), | ||
| rmarkdown (>= 2.25), | ||
| cli (>= 3.6.2), | ||
| codemetar (>= 0.3.5), | ||
| devtools (>= 2.4.5), | ||
| jsonlite (>= 1.8.8), | ||
| miniCRAN (>= 0.2.16), | ||
| pander (>= 0.6.5), | ||
| pkgbuild (>= 1.4.3), | ||
| roxygen2 (>= 7.3.1), | ||
| Rcpp (>= 1.0.12), | ||
| R2HTML (>= 2.3.3), | ||
| stringi (>= 1.8.3), | ||
| stringr (>= 1.5.1), | ||
| tools, | ||
| xtable (>= 1.8-4) | ||
| Encoding: UTF-8 | ||
| LazyData: true | ||
| RoxygenNote: 7.1.1 | ||
| RoxygenNote: 7.3.1 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.