Introduce KEGG ID conversions to BridgeDB service #104
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hechth
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May 12, 2022
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| conversions = [('hmdbid', 'pubchemid', 'from_hmdbid'), | ||
| ('hmdbid', 'chemspiderid', 'from_hmdbid'), | ||
| ('hmdbid', 'wikidataid', 'from_hmdbid'), | ||
| ('hmdbid', 'chebiid', 'from_hmdbid'), | ||
| ('hmdbid', 'keggid', 'from_hmdbid'), | ||
| ('pubchemid', 'hmdbid', 'from_pubchemid'), | ||
| ('pubchemid', 'chemspiderid', 'from_pubchemid'), | ||
| ('pubchemid', 'wikidataid', 'from_pubchemid'), | ||
| ('pubchemid', 'chebiid', 'from_pubchemid'), | ||
| ('pubchemid', 'keggid', 'from_pubchemid'), | ||
| ('chemspiderid', 'hmdbid', 'from_chemspiderid'), | ||
| ('chemspiderid', 'pubchemid', 'from_chemspiderid'), | ||
| ('chemspiderid', 'wikidataid', 'from_chemspiderid'), | ||
| ('chemspiderid', 'chebiid', 'from_chemspiderid'), | ||
| ('chemspiderid', 'keggid', 'from_chemspiderid'), | ||
| ('wikidataid', 'hmdbid', 'from_wikidataid'), | ||
| ('wikidataid', 'pubchemid', 'from_wikidataid'), | ||
| ('wikidataid', 'chemspiderid', 'from_wikidataid'), | ||
| ('wikidataid', 'chebiid', 'from_wikidataid'), | ||
| ('wikidataid', 'keggid', 'from_wikidataid'), | ||
| ('chebiid', 'hmdbid', 'from_chebiid'), | ||
| ('chebiid', 'pubchemid', 'from_chebiid'), | ||
| ('chebiid', 'chemspiderid', 'from_chebiid'), | ||
| ('chebiid', 'wikidataid', 'from_chebiid') | ||
| ('chebiid', 'wikidataid', 'from_chebiid'), | ||
| ('chebiid', 'keggid', 'from_chebiid'), | ||
| ('keggid', 'hmdbid', 'from_keggid'), | ||
| ('keggid', 'pubchemid', 'from_keggid'), | ||
| ('keggid', 'chemspiderid', 'from_keggid'), | ||
| ('keggid', 'wikidataid', 'from_keggid'), | ||
| ('keggid', 'chebiid', 'from_keggid'), | ||
| ] |
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I think this could be also at some point made as all possible combinations between the 4 initial identifiers - otherwise all good!
No, we removed all tests which actually rely on the contents of a service response, I think we shouldn't go back to that. |
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Added support for KEGG ID conversions to BridgeDB service.
Close #101.