Merge pull request #1 from RIVM-bioinformatics:hashed_output

Add hashed output
RIVM-bioinformatics · Jul 15, 2022 · d99de54 · d99de54
2 parents b5b651a + 387c53d
commit d99de54
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Showing 4 changed files with 6 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -4,6 +4,8 @@ __pycache__/
 envs/src/
 .pytest_cache/
 schemes/
+input/
+output/
 
 config/user_parameters.yaml
 config/sample_sheet.yaml
diff --git a/Snakefile b/Snakefile
@@ -42,7 +42,7 @@ localrules:
 rule all:
     input:
         expand(OUT + '/cgmlst/{scheme}/results_alleles.tsv', scheme=SCHEMES),
-        # expand(OUT + '/cgmlst/{scheme}/hashed_results_alleles.csv', scheme=SCHEMES)
+        expand(OUT + '/cgmlst/{scheme}/hashed_results_alleles.csv', scheme=SCHEMES)
 
 #@################################################################################
 #@####                              Processes                                #####

diff --git a/bin/get_allele_hashes.py b/bin/get_allele_hashes.py
@@ -244,6 +244,8 @@ def __get_hash_from_hash_id_tbl(self, hash_id_tbl, id_number):
         allele_hash = list(set(allele_hash))
         if len(allele_hash) > 1:
             f"The id number {id_number} did not deliver a unique hash: {allele_hash}"
+        elif len(allele_hash) < 1:
+            raise ValueError(f"The id number {id_number} did not deliver a hash")
         return allele_hash[0]
 
     def __gen_hash_per_id_num(self, hash_id_tbl, id_numbers, fasta_file):

diff --git a/bin/version.py b/bin/version.py
@@ -1 +1 @@
-__version__ = "0.1.0"
+__version__ = "0.2.0"