Skip to content
Testing and release

Generalized geodesic distance and notable vertex prescription #262

Sign in to view logs

Generalized geodesic distance and notable vertex prescription

Generalized geodesic distance and notable vertex prescription #262

Workflow file for this run

.github/workflows/ci.yaml at 554d16d
name: Testing and release
on:
push:
branches:
- main
- development
tags:
# The regex: /^v?((\d+)(\.\d+)*)(-?(a|b|c|rc|alpha|beta)([0-9]+)?)?$
- 'v[0-9].[0-9]+.[0-9]+*'
pull_request:
branches:
- main
- development
jobs:
build_linux:
name: Build-Test Linux
strategy:
fail-fast: false
matrix:
os: [ubuntu-20.04, ubuntu-22.04]
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
submodules: recursive
- uses: actions/setup-python@v5
id: pyexe
with:
python-version: '3.10'
# - name: Setup python libs
# id: pyexe
# run: |
# python3 --version
# python3 -m pip install pytest
# py_exe_path=$(which python3)
# echo ::set-output name=path::$py_exe_path
- name: Resolve dependencies
run: |
sudo apt-get update
sudo apt-get install libnetcdf-c++4-dev libnetcdf-dev xorg-dev libeigen3-dev pybind11-dev
- name: Build and test
run: |
mkdir -p build && cd build;
cmake -DCMAKE_BUILD_TYPE=RELEASE -DBUILD_PYMEM3DG=ON -DSUITESPARSE=OFF -DWITH_NETCDF=ON -DPython_EXECUTABLE:FILEPATH=${{ steps.pyexe.outputs.python-path }} --log-level=DEBUG ..
cmake --build . --config Release -j 4
ctest -C Release -V -j 4
build_macos:
name: Build-Test macOS
strategy:
fail-fast: false
matrix:
os: [macos-15]
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
submodules: recursive
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: mem3dg
python-version: "3.11"
channels: conda-forge
- name: Resolve dependencies
run: |
conda install -c netcdf-cxx4 eigen pybind11
- name: Build
run: |
mkdir -p build && cd build;
cmake -DCMAKE_BUILD_TYPE=RELEASE -DBUILD_PYMEM3DG=ON -DSUITESPARSE=OFF -DWITH_NETCDF=ON --log-level=DEBUG ..
cmake --build . --config Release -j 4
- name: Test
run: ctest -C Release -V -j 4
# build_windows:
# name: Build-Test Windows
# strategy:
# fail-fast: false
# matrix:
# os: [windows-latest]
# runs-on: ${{ matrix.os }}
# defaults:
# run:
# shell: bash
# steps:
# - uses: actions/checkout@v3
# with:
# fetch-depth: 0
# submodules: recursive
# - name: Setup python libs
# id: pyexe
# run: |
# python --version
# python -m pip install pytest
# py_exe_path=$(which python)
# echo ::set-output name=path::$py_exe_path
# - name: Restore from cache and install vcpkg
# # Download and build vcpkg, without installing any port. If content is cached already, it is a no-op.
# uses: lukka/run-vcpkg@v11
# with:
# vcpkgGitCommitId: 5c9f906558f9bb12ee9811d6edc98ec9255c6cda5
# setupOnly: true
# - name: Download libraries
# run: $VCPKG_ROOT/vcpkg install netcdf-c:x64-windows netcdf-cxx4:x64-windows eigen3:x64-windows
# - name: Build and test
# run: |
# mkdir -p build && cd build;
# cmake -DCMAKE_BUILD_TYPE=RELEASE -DBUILD_PYMEM3DG=ON -DSUITESPARSE=OFF -DWITH_NETCDF=ON -DPython_EXECUTABLE:FILEPATH=${{ steps.pyexe.outputs.path }} -DCMAKE_TOOLCHAIN_FILE="$VCPKG_ROOT/scripts/buildsystems/vcpkg.cmake" ..
# cmake --build . --config Release -j 4
# ctest -C Release -V -j 4
deploy_documentation:
name: Deploy documentation to Github pages
runs-on: ubuntu-latest
# needs: [build_windows, build_linux, build_macos]
# if: github.ref == 'refs/heads/master'
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
submodules: recursive
- name: Get Project Version
id: version
run: |
mem3dg_version=$(git describe --tags --always --dirty)
echo $mem3dg_version
echo ::set-output name=version::$mem3dg_version
- name: Configure python version
uses: actions/setup-python@v5
with:
python-version: '3.10'
- name: Setup python libs
id: pyexe
run: |
python3 --version
py_exe_path=$(which python3)
echo ::set-output name=path::$py_exe_path
- name: Resolve dependencies
run: |
sudo apt-get update
sudo apt-get install libnetcdf-c++4-dev libnetcdf-dev xorg-dev libeigen3-dev pybind11-dev ninja-build doxygen
- name: Build pymem3dg and install
run: |
python3 -m pip install -v ".[docs]"
- name: Build docs
run: |
mkdir -p build && cd build;
cmake -DCMAKE_BUILD_TYPE=RELEASE -DBUILD_MEM3DG_DOCS=ON -DBUILD_PYMEM3DG=ON -DSUITESPARSE=OFF -DWITH_NETCDF=ON -DPython_EXECUTABLE:FILEPATH=${{ steps.pyexe.outputs.path }} ..
cmake --build . --target mem3dg_doxy_docs --config Release -j 4
cmake --build . --target mem3dg_sphinx_docs --config Release -j 4
- name: Deploy cpp docs
uses: peaceiris/actions-gh-pages@v3
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
destination_dir: ${{ steps.version.outputs.version }}/cpp
publish_dir: ./build/docs/cpp/html
enable_jekyll: true
- name: Deploy python docs
uses: peaceiris/actions-gh-pages@v3
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
destination_dir: ${{ steps.version.outputs.version }}/py
publish_dir: ./build/docs/py/html
enable_jekyll: true
deploy_to_pypi:
name: Deploy to PyPI
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
runs-on: ubuntu-latest
needs: [build_linux, build_macos]
defaults:
run:
shell: bash
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
submodules: recursive
- name: Update python libs
run: python -m pip install build
- name: Configures source dist
run: python -m build --sdist
- name: Display structure of files
run: ls -R
- name: Publish package
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_API_TOKEN }}