Poc

.Rbuildignore

@@ -9,3 +9,4 @@
 ^CODE_OF_CONDUCT\.md$
 ^data-raw$
 ^Dockerfile$
+^dev$

.github/workflows/harbor.yml

@@ -0,0 +1,58 @@
+name: Publish Docker image to Harbor
+on:
+  release:
+    types: [published]
+  push:
+    branches:
+        - main
+  pull_request:
+    branches:
+        - main
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  build:
+    name: Push Docker image to Harbor
+    runs-on: ubuntu-latest
+    env:
+        IMAGE_NAME: ${{ github.repository }}
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+      - name: Lint Dockerfile
+        uses: hadolint/hadolint-action@v3.1.0
+        with:
+          dockerfile: "Dockerfile"
+      - name: R setup
+        uses: r-lib/actions/setup-r@v2
+      - name: Build package (tarball)
+        run: R CMD build .
+      - name: Prepare tags
+        id: docker_meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.IMAGE_NAME }}
+          flavor: |
+            latest=false
+          tags: |
+            type=ref,event=branch
+            type=ref,event=pr
+            type=semver,pattern={{version}}
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      - name: Login to Harbor
+        if: github.event_name == 'release'
+        run: |
+          echo ${{ secrets.HARBOR_PASSWORD }} | docker login --username ${{ secrets.HARBOR_USERNAME }} --password-stdin ${{ secrets.HARBOR_REGISTRY }}
+      - name: Build image and push to Harbor
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          file: ./Dockerfile
+          tags: ${{ secrets.HARBOR_REGISTRY }}/${{ steps.docker_meta.outputs.tags }}
+          push: ${{ github.event_name == 'release' }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: ablanor
 Title: AblaNor- Rapporteket
-Version: 1.3.3
+Version: 2.0.0.9000
 Authors@R: c(
   person(given = "Kristina",
            family = "Skaare",
@@ -14,7 +14,12 @@ Authors@R: c(
          family = "Edvardsen",
          role = c("aut"),
          email = "biorakel@gmail.com",
-         comment = c(ORCID = "0000-0002-5210-3656")))
+         comment = c(ORCID = "0000-0002-5210-3656")),
+    person(given = "Arnfinn Hykkerud",
+           family = "Steindal",
+           role = c("aut"),
+           email = "arnfinn.hykkerud.steindal@helse-nord.no",
+           comment = c(ORCID = "0000-0002-4088-7860")))
 Description: An implemetation of all R related resources for AblaNor (Nasjonalt register for ablasjonsbehandling og elektrofysiologi i Norge). 
 License: GPL-3
 Encoding: UTF-8
@@ -44,7 +49,7 @@ Imports:
     tidyr,
     tidyselect
 Remotes:
-    Rapporteket/rapbase@*release
+    Rapporteket/rapbase@main
 URL: https://github.com/rapporteket/ablanor
 BugReports: https://github.com/rapporteket/ablanor/issues
 Depends: 

Dockerfile

@@ -1,16 +1,22 @@
-FROM rapporteket/base-r:4.2.1
+FROM rapporteket/base-r:main
 
-LABEL maintainer "Are Edvardsen <are.edvardsen@helse-nord.no>"
+LABEL maintainer="Arnfinn Hykkerud Steindal <arnfinn.hykkerud.steindal@helse-nord.no>"
 LABEL no.rapporteket.cd.enable="true"
 
 WORKDIR /app/R
 
-# hadolint ignore=DL3010
 COPY *.tar.gz .
 
 RUN R -e "remotes::install_local(list.files(pattern = \"*.tar.gz\"))" \
-    && rm ./*.tar.gz
+    && rm ./*.tar.gz \
+    && R -e "remotes::install_github(\"Rapporteket/rapbase\", ref = \"main\")" \
+    && tlmgr update --self && tlmgr install xkeyval
 
-EXPOSE 3008
+EXPOSE 3838
 
-CMD ["R", "-e", "options(shiny.port = 3008,shiny.host = \"0.0.0.0\"); ablanor::run_app()"]
+RUN adduser --uid "1000" --disabled-password rapporteket && \
+    chown -R 1000:1000 /app/R && \
+    chmod -R 755 /app/R
+USER rapporteket
+
+CMD ["R", "-e", "options(shiny.port = 3838, shiny.host = \"0.0.0.0\"); ablanor::run_app()"]