Flyttet app fra inst-mappe til R-mappe

.Rbuildignore

@@ -1,12 +1,10 @@
-^.*\.Rproj$
-^\.Rproj\.user$
-^\.travis\.yml$
-^appveyor\.yml$
-^_pkgdown\.yml$
-^docs$
-^pkgdown$
-^LICENSE\.md$
-^Rprofile.site$
-^Dockerfile$
-^\.lintr$
-^\.github$
+^.*\.Rproj$
+^\.Rproj\.user$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^LICENSE\.md$
+^Rprofile.site$
+^Dockerfile$
+^\.lintr$
+^\.github$

.github/workflows/docker.yml

@@ -0,0 +1,54 @@
+name: Publish Docker image
+on:
+  release:
+    types: [published]
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  push_to_registries:
+    name: Push Docker image to docker hub
+    runs-on: ubuntu-latest
+    env:
+      IMAGE_NAME: ${{ github.repository }}
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+      - name: R setup
+        uses: r-lib/actions/setup-r@v2.6.5
+      - name: Build package (tarball)
+        run: R CMD build .
+      - name: Lint Dockerfile
+        uses: hadolint/hadolint-action@v3.1.0
+        with:
+          dockerfile: "Dockerfile"
+      - name: Prepare tags
+        id: docker_meta
+        uses: docker/metadata-action@v5.0.0
+        with:
+          images: ${{ env.IMAGE_NAME }}
+          tags: |
+            type=ref,event=branch
+            type=ref,event=pr
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3.0.0
+      - name: Login to DockerHub
+        if: github.event_name != 'pull_request'
+        uses: docker/login-action@v3.0.0
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      - name: Push to Docker Hub
+        uses: docker/build-push-action@v5.0.0
+        with:
+          context: .
+          file: ./Dockerfile
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.docker_meta.outputs.tags }}
+          labels: ${{ steps.docker_meta.outputs.labels }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max

.gitignore

@@ -7,3 +7,4 @@ figure
 inst/shinyApps/app1/*.md
 inst/*.md
 docs/
+*.tar.gz

DESCRIPTION

@@ -27,7 +27,7 @@ Remotes:
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.1.1
+RoxygenNote: 7.2.3
 URL: http://github.com/Rapporteket/rapRegTemplate
 BugReports: http://github.com/Rapporteket/rapRegTemplate/issues
 Suggests: 

Dockerfile

@@ -1,33 +1,17 @@
-FROM rocker/r-base
+FROM rapporteket/base-r:4.2.1
 
-LABEL maintainer "Are Edvardsen <are.edvardsen@helse-nord.no>"
-LABEL no.mongr.cd.enable="true"
+LABEL maintainer "Arnfinn Hykkerud Steindal <arnfinn.hykkerud.steindal@helse-nord.no>"
 
-# system libraries of general use
-RUN apt-get update && apt-get install -y \
-    sudo \
-    pandoc \
-    pandoc-citeproc \
-    libcurl4-gnutls-dev \
-    libcairo2-dev \
-    libxt-dev \
-    libxml2-dev \
-    default-jdk \
-    libssl-dev \
-    libmariadbclient-dev 
+LABEL no.rapporteket.cd.enable="true"
 
-# basic R functionality
-RUN R -e "install.packages(c('remotes'), repos='https://cloud.r-project.org/')"
+WORKDIR /app/R
 
-# install rapRegTemplate app
-RUN R -e "remotes::install_github('Rapporteket/rapRegTemplate')"
+# hadolint ignore=DL3010
+COPY *.tar.gz .
 
-# copy the app to the image
-RUN mkdir /root/rapRegTemplate
-COPY inst/shinyApps/app1 /root/rapRegTemplate
-
-COPY Rprofile.site /usr/lib/R/etc/
+RUN R -e "remotes::install_local(list.files(pattern = \"*.tar.gz\"))" \
+    && rm ./*.tar.gz
 
 EXPOSE 3838
 
-CMD ["R", "-e", "shiny::runApp('/root/rapRegTemplate')"]
+CMD ["R", "-e", "options(shiny.port = 3838,shiny.host = \"0.0.0.0\"); rapRegTemplate::run_app()"]

NAMESPACE

@@ -1,5 +1,10 @@
 # Generated by roxygen2: do not edit by hand
 
+export("%>%")
+export(app_server)
+export(app_ui)
 export(getFakeRegData)
 export(getRegData)
 export(makeHist)
+export(run_app)
+importFrom(magrittr,"%>%")