Merge pull request #65 from Rapporteket/db-unittest

run db unit tests github actions, ubuntu only

.github/workflows/R-CMD-check.yaml

@@ -40,6 +40,21 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v1
 
+      - name: Db unit tests in ubuntu/linux only
+        if: runner.os != 'Windows'
+        run: |
+          if [[ ${{ runner.os }} == Linux ]]; then
+            echo "GITHUB_ACTIONS_RUN_DB_UNIT_TESTS=true" >> $GITHUB_ENV
+          else
+            echo "GITHUB_ACTIONS_RUN_DB_UNIT_TESTS=false" >> $GITHUB_ENV
+          fi
+
+      - name: Set up MySQL, ubuntu only
+        if: runner.os == 'Linux'
+        run: |
+          sudo /etc/init.d/mysql start
+          mysql -e 'CREATE DATABASE IF NOT EXISTS rapbase; USE rapbase; CREATE TABLE testTable (id INT, someText VARCHAR(50), someInt INT, someFloat DOUBLE, someTime DATETIME);' -uroot -proot
+
       - name: Query dependencies
         run: |
           install.packages('remotes')

.github/workflows/test-coverage.yaml

@@ -13,14 +13,20 @@ jobs:
     runs-on: ubuntu-20.04
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      GITHUB_ACTIONS_RUN_DB_UNIT_TESTS: true
     steps:
       - uses: actions/checkout@v2
-      
+
       - name: Install unmet sys deps
         run: |
           sudo apt update
           sudo apt install -y --no-install-recommends libcurl4-openssl-dev libgit2-dev
 
+      - name: Set up MySQL for unit testing
+        run: |
+          sudo /etc/init.d/mysql start
+          mysql -e 'CREATE DATABASE IF NOT EXISTS rapbase; USE rapbase; CREATE TABLE testTable (id INT, someText VARCHAR(50), someInt INT, someFloat DOUBLE, someTime DATETIME);' -uroot -proot
+
       - uses: r-lib/actions/setup-r@v1
 
       - uses: r-lib/actions/setup-pandoc@v1

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: rapbase
 Type: Package
 Title: Base Functions and Resources for Rapporteket
-Version: 1.13.0
+Version: 1.13.1
 Authors@R: c(
     person(given = "Are",
            family = "Edvardsen",

NEWS.md

@@ -1,3 +1,7 @@
+# rapbase 1.13.1
+
+* Included unit tests and coverage reporting depending on a test database during github actions (ci) 
+
 # rapbase 1.13.0
 
 * New function providing registry db metadata

inst/dbConfig.yml

@@ -10,8 +10,8 @@ nordummy:
 rapbase:
   host : 127.0.0.1
   name : rapbase
-  user : travis
-  pass : 
+  user : root
+  pass : root
   disp : ForTestingOnly
 
 # for testing, in rap-dev-data container

tests/testthat/test-dbConnection.R

@@ -14,7 +14,7 @@ context("Handling db connections")
 checkDb <- function() {
   if (Sys.getenv("R_RAP_INSTANCE") == "DEV") {
     NULL
-  } else if (Sys.getenv("TRAVIS") == "true") {
+  } else if (Sys.getenv("GITHUB_ACTIONS_RUN_DB_UNIT_TESTS") == "true") {
     NULL
   } else {
     testthat::skip("Test skipped due to lack of database infrastructure")