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Releases: RekerLab/MolALKit

v0.9.1

27 Mar 04:23
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Bugfix for restarting active learning from checkpoint file.

v0.9.0

24 Mar 01:25
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Update to be compatible with mgktools==2.0.0.
Bugfix for chemprop models and GPR-MGK-Morgan when dealing with multi-molecular datasets.

v0.8.0

04 Mar 23:55
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Add surrogate ML models: adaboost and xgboost.
Add features: sequential-pool active learning; partial-query active learning.

v0.7.0

14 Jan 03:36
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Support logger output of chemprop.
Support continuous_fit of chemprop during active learning.
Support read pretrained model for chemprop.

v0.6.3

10 Jan 04:44
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Simplify the code by using the args of chemprop for DMPNN.
Set default training epoch to 30 for neural networks.

Bug fix:
Set the acquisition value of passive learning to [] instead of None.
Missing trajectory frames for checkpoint file.

Add argument:
--write_traj_stride, set the frequency to output the trajectory file.

v0.6.2

26 Dec 05:18
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Bugfix:
Continue active learning from checkpoint file.
Do not write repeated results when continue active learning from checkpoint file.

v0.6.1

20 Dec 14:52
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Bugfix:
The parameter C of support vector machine is not correctly passed.
The model configs for two molecules data sets are updated.

v0.6.0

15 Dec 02:29
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Add 3 metrics for regression tasks: Spearman's r, Pearson's r, and Kendall's tau.

v0.5.2

14 Dec 00:40
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Bugfix:

  1. Evaluate the model performance at the last iteration.
  2. Unify the dataset structure of mgktools, molalkit, and deepchem. The dataset.y is always 2-dimensional numpy array.
  3. Add more unit tests.

v0.5.1

11 Dec 21:04
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bugfix: when init_size is larger than the entire data, turn to cross validation.