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Add ReproNim/simple_workflow docker based singularity image
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yarikoptic committed May 18, 2019
1 parent cf66285 commit d4108e9
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18 changes: 18 additions & 0 deletions images/repronim/Singularity.repronim-simple-workflow--1.1.0
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#
# Automagically prepared for ReproNim/containers distribution.
# See http://github.com/ReproNim/containers for more info
#
Bootstrap: docker
From: repronim/simple_workflow:1.1.0

%post

# Create commonly present root directories to avoid need in overlays not supported
# on older systems
mkdir -p /ihome /data /data2 /zfs /isi /dartfs /dartfs-hpc

%environment
export LANG="en_US.UTF-8"
export LC_ALL="en_US.UTF-8"

# TODO: Take advantage of the fact that it is a bids-app somehow?
9 changes: 8 additions & 1 deletion scripts/create_singularities
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# validator is not bids-app but we will stick it along with bids
generate_singularity_for_docker_image "bids/validator" "bids"

# "Native" Singularity images

#
# ReproNim
#

# "Native" Singularity image for ReproIn
add_singularity_image_from_collection 588 "ReproNim/reproin" "repronim"
# Docker image for simple_workflow
generate_singularity_for_docker_image "ReproNim/simple_workflow" "repronim"

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