Squashed commit of the following:

commit bcb5f8f Merge: ed58ece 50eb865 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 21 13:45:55 2023 +0300 Merge branch 'Dev' of https://github.com/RfastOfficial/Rfast2 into Dev commit ed58ece Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 21 13:45:44 2023 +0300 Update parallel.h commit bd0cd71 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 21 13:45:40 2023 +0300 update date commit 50eb865 Author: statlink <mtsagris@yahoo.gr> Date: Wed Jul 19 16:45:31 2023 +0300 change commit 1511061 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 19 02:32:31 2023 +0300 fix bug with clang and apple mac commit d3d04e7 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 19 02:32:03 2023 +0300 Update NEWS.md commit feb5e2a Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 19 02:31:58 2023 +0300 Update Rfast2-package.Rd commit 6098801 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 19 02:31:51 2023 +0300 Update DESCRIPTION commit 1d214fa Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 12 18:29:49 2023 +0300 add tbb commit ea9d666 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 12 18:29:41 2023 +0300 Update Rfast2-package.Rd commit 59983ef Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 12 18:29:39 2023 +0300 Update parallel.h commit 8637164 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Jul 12 18:29:33 2023 +0300 Update DESCRIPTION commit cae025a Author: Manos Papadakis <papadakm95@gmail.com> Date: Tue Jul 11 17:49:28 2023 +0300 add mising option parallel commit f88875c Author: Manos Papadakis <papadakm95@gmail.com> Date: Tue Jul 11 17:34:51 2023 +0300 Update init.c commit 2aaec6a Author: Manos Papadakis <papadakm95@gmail.com> Date: Tue Jul 11 17:34:48 2023 +0300 Update onAttach.R commit 330f2bf Author: Manos Papadakis <papadakm95@gmail.com> Date: Tue Jul 11 17:34:44 2023 +0300 Update .Rbuildignore commit ca46228 Merge: 55eb8d9 5bc90bc Author: statlink <mtsagris@yahoo.gr> Date: Tue Jul 11 16:15:46 2023 +0300 Merge branch 'Dev' of https://github.com/RfastOfficial/Rfast2 into Dev commit 55eb8d9 Author: statlink <mtsagris@yahoo.gr> Date: Tue Jul 11 16:15:43 2023 +0300 changes commit 5bc90bc Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:24:38 2023 +0300 add parallel to vector functions commit 747beec Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:24:17 2023 +0300 export to linking to functions and support c++17 parallelization commit 565199d Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:23:46 2023 +0300 change cores for omp by user commit 220d057 Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:23:06 2023 +0300 Update init.c commit 4cd20ed Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:23:03 2023 +0300 Update Rfast2-package.Rd commit ca4764d Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:22:59 2023 +0300 Update NEWS.md commit cec9c9d Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:22:54 2023 +0300 remove system.time commit 87b573f Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:22:40 2023 +0300 support c++17 parallel ppolicy using RcppParallel commit b47e649 Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:21:15 2023 +0300 Update DESCRIPTION commit ea15df7 Author: Manos Papadakis <papadakm95@gmail.com> Date: Mon Jul 10 17:21:12 2023 +0300 Update settings.json commit 2603982 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:14:19 2023 +0300 Update col_row_utilities.cpp commit 0c23705 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:14:15 2023 +0300 Delete templates.h commit 3c17730 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:14:11 2023 +0300 Update utilities.cpp commit 3670e43 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:14:04 2023 +0300 fix headers commit 046fcc7 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:13:44 2023 +0300 Update init.c commit 74e3e13 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:13:38 2023 +0300 fix headers commit 5cc7bac Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:13:02 2023 +0300 Update NEWS.md commit 665065b Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:12:56 2023 +0300 add core argument for parallelization commit 36fdd77 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:11:34 2023 +0300 code for checking concepts commit 7b8b7ca Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 13:09:12 2023 +0300 create for linking to commit 6029327 Author: Manos Papadakis <papadakm95@gmail.com> Date: Fri Jul 7 12:57:52 2023 +0300 Create settings.json commit 1505a2c Author: statlink <mtsagris@yahoo.gr> Date: Tue Apr 11 11:16:24 2023 +0300 changes commit c1c0c97 Author: statlink <mtsagris@yahoo.gr> Date: Sat Apr 8 11:13:26 2023 +0300 changes commit e44c596 Author: Manos Papadakis <papadakm95@gmail.com> Date: Wed Apr 5 16:49:30 2023 +0300 fix bug
RfastOfficial · Jul 21, 2023 · 16c9637 · 16c9637
1 parent 99e340b
commit 16c9637
Show file tree

Hide file tree

Showing 51 changed files with 2,634 additions and 1,849 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -3,4 +3,6 @@
 ^docs
 ^.todo
 ^.github
-^.html
+^.html
+^.gitignore
+^.vscode
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -0,0 +1,81 @@
+{
+    "files.associations": {
+        "random": "cpp",
+        "array": "cpp",
+        "chrono": "cpp",
+        "deque": "cpp",
+        "format": "cpp",
+        "forward_list": "cpp",
+        "initializer_list": "cpp",
+        "list": "cpp",
+        "vector": "cpp",
+        "xhash": "cpp",
+        "xstring": "cpp",
+        "xtree": "cpp",
+        "xutility": "cpp",
+        "algorithm": "cpp",
+        "utility": "cpp",
+        "atomic": "cpp",
+        "bit": "cpp",
+        "cctype": "cpp",
+        "charconv": "cpp",
+        "clocale": "cpp",
+        "cmath": "cpp",
+        "compare": "cpp",
+        "concepts": "cpp",
+        "cstddef": "cpp",
+        "cstdint": "cpp",
+        "cstdio": "cpp",
+        "cstdlib": "cpp",
+        "cstring": "cpp",
+        "ctime": "cpp",
+        "cwchar": "cpp",
+        "exception": "cpp",
+        "fstream": "cpp",
+        "iomanip": "cpp",
+        "ios": "cpp",
+        "iosfwd": "cpp",
+        "iostream": "cpp",
+        "istream": "cpp",
+        "iterator": "cpp",
+        "limits": "cpp",
+        "locale": "cpp",
+        "map": "cpp",
+        "memory": "cpp",
+        "mutex": "cpp",
+        "new": "cpp",
+        "optional": "cpp",
+        "ostream": "cpp",
+        "ratio": "cpp",
+        "sstream": "cpp",
+        "stack": "cpp",
+        "stdexcept": "cpp",
+        "stop_token": "cpp",
+        "streambuf": "cpp",
+        "string": "cpp",
+        "system_error": "cpp",
+        "thread": "cpp",
+        "tuple": "cpp",
+        "type_traits": "cpp",
+        "typeinfo": "cpp",
+        "unordered_map": "cpp",
+        "xfacet": "cpp",
+        "xiosbase": "cpp",
+        "xlocale": "cpp",
+        "xlocbuf": "cpp",
+        "xlocinfo": "cpp",
+        "xlocmes": "cpp",
+        "xlocmon": "cpp",
+        "xlocnum": "cpp",
+        "xloctime": "cpp",
+        "xmemory": "cpp",
+        "xstddef": "cpp",
+        "xtr1common": "cpp",
+        "functional": "cpp",
+        "queue": "cpp",
+        "*.rmd": "markdown",
+        "unordered_set": "cpp",
+        "execution": "cpp",
+        "numeric": "cpp"
+    }
+}
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,12 +1,13 @@
 Package: Rfast2
 Type: Package
 Title: A Collection of Efficient and Extremely Fast R Functions II
-Version: 0.1.4
-Date: 2023-02-14
+Version: 0.1.5.1
+Date: 2023-07-21
 Author: Manos Papadakis, Michail Tsagris, Stefanos Fafalios and Marios Dimitriadis.
 Maintainer: Manos Papadakis <rfastofficial@gmail.com>
-Depends: R (>= 3.5.0), Rcpp (>= 0.12.3)
-LinkingTo: Rcpp (>= 0.12.3), RcppArmadillo
+Depends: R (>= 3.5.0), Rcpp (>= 0.12.3), RcppParallel
+LinkingTo: Rcpp (>= 0.12.3), RcppArmadillo, RcppParallel
+SystemRequirements: C++17
 Imports: Rfast, RANN
 BugReports: https://github.com/RfastOfficial/Rfast2/issues
 URL: https://github.com/RfastOfficial/Rfast2

diff --git a/NAMESPACE b/NAMESPACE
@@ -10,6 +10,7 @@ importFrom("Rfast", vm.mle, colvm.mle, colmeans, colsums, eachrow,group, colVars
 importFrom("RANN", nn2)
 
 importFrom(Rcpp, evalCpp)
+importFrom(RcppParallel, RcppParallelLibs)
 
 export(.onAttach,Intersect,Merge,Quantile,Runif,Sample,Sample.int,add.term,benchmark,bernoulli.nb,bernoullinb.pred,beta.nb,betanb.pred,bic.regs,big.knn,bigknn.cv,binom.reg,boot.hotel2,boot.james,boot.student2,boot.ttest1,cauchy.nb,cauchy0.mle,cauchy0.mle,cauchynb.pred,cbern.mle,censpois.mle,censpois.mle,censweib.reg,censweibull.mle,censweibull.mle,circ.cor1,circ.cors1,cls,cluster.lm,col.waldpoisrat,colGroup,colQuantile,colTrimMean,colaccs,colbeta.mle,colborel.mle,colcauchy.mle,colfbscores,colfmis,colfscores,colhalfnorm.mle,coljack.means,collogitnorm.mle,collognorm.mle,colmaes,colmeansvars,colmses,colordinal.mle,colpinar1,colpkl,colprecs,colsens,colspecs,colspml.mle,colukl,colunitweibull.mle,colwlsmeta,cor_test,covar,covdist,covequal,covlikel,covmtest,covrob.lm,dcora,den.contours,depth.mahala,diffic,discrim,embed.circaov,empirical.entropy,fbed.reg,fe.lmfit,fedhc.skel,fipois.reg,fisher.da,fp,gammapois.mle,gammapois.mle,gammareg,gammaregs,gee.reg,gnormal0.mle,gumbel.reg,halfcauchy.mle,halfcauchy.mle,hcf.circaov,hellinger.countreg,het.circaov,het.lmfit,hp.reg,is.lower.tri,is.skew.symmetric,is.upper.tri,jack.mean,km,kumar.mle,kumar.mle,laplace.nb,laplacenb.pred,leverage,lm.bsreg,lm.drop1,lm.parboot,logiquant.regs,logitnorm.nb,logitnormnb.pred,lr.circaov,lud,mci,mle.lda,mmhc.skel,mmpc,mmpc2,moranI,multinom.reg,multinomreg.cv,multispml.mle,multivm.mle,mv.score.betaregs,mv.score.expregs,mv.score.gammaregs,mv.score.glms,mv.score.invgaussregs,mv.score.weibregs,nb.cv,negbin.reg,negbin.regs,normlog.nb,normlognb.pred,omp2,overdispreg.test,pc.sel,pca,pcr,perm.ttest2,pinar1,pooled.colVars,powerlaw.mle,powerlaw.mle,prophelling.reg,propols.reg,purka.mle,purka.mle,rbeta1,refmeta,reg.mle.lda,regmlelda.cv,riag,rm.hotel,rowQuantile,rowTrimMean,rowjack.means,sclr,score.zipregs,simplex.mle,simplex.mle,sp.logiregs,sp.mle,spml.nb,spmlnb.pred,stud.ttests,tobit.reg,trim.mean,trunccauchy.mle,trunccauchy.mle,truncexpmle,truncexpmle,unitweibull.mle,vm.nb,vmnb.pred,wald.poisrat,walter.ci,weib.regs,weibull.nb,weibullnb.pred,welch.tests,wild.boot,wlsmeta,zigamma.mle,zigamma.mle,zigamma.reg,zil.mle,zil.mle,ziweibull.mle,ziweibull.mle,ztp.reg)