Merge pull request #265 from RobokopU24/add_GHaction

Added a GitHub action...

.github/scripts/Bio_QC_check.py

@@ -0,0 +1,46 @@
+import os
+import requests
+
+PREDICATE_KEYWORDS = ["predicate", "biolink:", "edges"]
+LABEL_NAME = "Biological Context QC"  # Label to add if keywords are found
+
+# GitHub API variables
+GITHUB_TOKEN = os.getenv("GITHUB_TOKEN")
+REPO_NAME = os.getenv("GITHUB_REPOSITORY")
+ISSUE_NUMBER = os.getenv("ISSUE_NUMBER")
+print("GITHUB_TOKEN:", GITHUB_TOKEN)
+print("REPO_NAME:", REPO_NAME)
+print("ISSUE_NUMBER:", ISSUE_NUMBER)
+
+headers = {"Authorization": f"Bearer {GITHUB_TOKEN}"}
+api_url = f"https://api.github.com/repos/{REPO_NAME}"
+
+def get_issue_details(issue_number):
+    response = requests.get(f"{api_url}/issues/{issue_number}", headers=headers)
+    response.raise_for_status()
+    return response.json()
+
+def add_label(issue_number, label_name):
+    response = requests.post(
+        f"{api_url}/issues/{issue_number}/labels",
+        headers=headers,
+        json={"labels": [label_name]}
+    )
+    response.raise_for_status()
+    print(f"Label '{label_name}' added to issue/PR #{issue_number}")
+
+def check_keywords_in_text(text, keywords):
+    return any(keyword in text for keyword in keywords)
+
+def main():
+    issue_details = get_issue_details(ISSUE_NUMBER)
+    title = issue_details["title"]
+    body = issue_details["body"]
+
+    if check_keywords_in_text(title, PREDICATE_KEYWORDS) or check_keywords_in_text(body, PREDICATE_KEYWORDS):
+        add_label(ISSUE_NUMBER, LABEL_NAME)
+    else:
+        print("No predicate keywords found.")
+
+if __name__ == "__main__":
+    main()

.github/workflows/label-predicate-changes.yml

@@ -0,0 +1,32 @@
+name: 'Label Predicate Changes'
+
+on:
+  pull_request:
+    types: [opened, edited, synchronize]
+  issues:
+    types: [opened, edited]
+
+jobs:
+  label_check:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Check out code
+      uses: actions/checkout@v3
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.9
+
+    - name: Install dependencies
+      run: |
+        pip install -r requirements.txt
+        pip install PyGithub 
+
+    - name: Run predicate check
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        ISSUE_NUMBER: ${{ github.event.pull_request.number || github.event.issue.number }}
+      run: |
+        python .github/scripts/Bio_QC_check.py

requirements.txt

@@ -15,4 +15,4 @@ neo4j==5.20.0
 pyoxigraph==0.3.22
 curies==0.7.9
 prefixmaps==0.2.4
-bmt==1.4.1
+bmt==1.4.1