No such keg: /opt/homebrew/Cellar/r

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:

replacing previous import 'devtools::install_dev' by 'remotes::install_dev' when loading 'compileCourses'

replacing previous import 'devtools::install_bioc' by 'remotes::install_bioc' when loading 'compileCourses'

replacing previous import 'devtools::install_git' by 'remotes::install_git' when loading 'compileCourses'

replacing previous import 'devtools::update_packages' by 'remotes::update_packages' when loading 'compileCourses'

replacing previous import 'devtools::install_url' by 'remotes::install_url' when loading 'compileCourses'

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

harfbuzz 8.5.0 is already installed and up-to-date. To reinstall 8.5.0, run: brew reinstall harfbuzz

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-arm64/contrib/4.3:

replacing previous import ‘devtools::install_dev’ by ‘remotes::install_dev’ when loading ‘compileCourses’

replacing previous import ‘devtools::install_bioc’ by ‘remotes::install_bioc’ when loading ‘compileCourses’

replacing previous import ‘devtools::install_git’ by ‘remotes::install_git’ when loading ‘compileCourses’

replacing previous import ‘devtools::update_packages’ by ‘remotes::update_packages’ when loading ‘compileCourses’

replacing previous import ‘devtools::install_url’ by ‘remotes::install_url’ when loading ‘compileCourses’

replacing previous import ‘devtools::install_deps’ by ‘remotes::install_deps’ when loading ‘compileCourses’

replacing previous import ‘devtools::install_gitlab’ by ‘remotes::install_gitlab’ when loading ‘compileCourses’

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/macosx/big-sur-arm64/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-arm64/contrib/4.3: